1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcctagataatagaagttttaatcttcttgaggcttgtaaccatcttcatattttgttgggtttttaaagtatatatgacgatgcactctgatgtttcagGGAACTCTATGGGCAAAGAGAATACTACCAGTTAGTGAAACCTGGTTTTTTTTAATGTCTTTTGGAACATAAAAATTCAGGGTGAGGACATGGCTTCCCT
species | Glycine max |
transcript | GLYMA01G23820.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTGCCTGAAGGGAAGGCTGTGATCAAATCAGAGTCCATGGCTGATCTAGC GGAACTCTATGGGCAAAGAGAATACTACCAGTTAGTGAAACCTGGNNNNNNEST: gi|151403610|gb|EV273420.1|EV273420
genomic: CTGCCTGAAGGGAAGGCTGTGATCAAATCAGAGTCCATGGCTGATCTAGCgtaagttaat ... gatgtttcagGGAACTCTATGGGCAAAGAGAATACTACCAGTTAGTGAAACCTGGTTTTTT
EST: CTGCCTGAAGGGAAGGCTGTGATCAAATCAGAGTCCATGGCTGATCTAGC GGAACTCTATGGGCAAAGAGAATACTACCAGTTAGTGAAACCTGGNNNNNN
genomic: CTGCCTGAAGGGAAGGCTGTGATCAAATCAGAGTCCATGGCTGATCTAGCgtaagttaat ... gatgtttcagGGAACTCTATGGGCAAAGAGAATACTACCAGTTAGTGAAACCTGGTTTTTT
ttcatattttgttgggtttttaaagtatatatgacgatgcactctgatgtttcagGGAACTCTATGGGCAAAGAGAATACTACCAGTTAGTGAAACCTGGTTTTTTTTAATGTCTTTTGGAACATAAAAATTCAGGGTGAGGACATGGCTTCCCT
ctctgat putative branch site (score: 4)
tttttaaagtatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcctagataatagaagttttaatcttcttgaggcttgtaaccatcttcatattttgttgggtttttaaagtatatatgacgatgcactctgatgtttcagGGAACTCTATGGGCAAAGAGAATACTACCAGTTAGTGAAACCTGGTTTTTTTTAATGTCTTTTGGAACATAAAAATTCAGGGTGAGGACATGGCTTCCCT
- - - - - - - - - - - -cttcttg
- - - - - - - - - - - - - - - - gcttgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgcac