1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...taatgtgaaaatttgttgaacacccggaacaatacacactaatgatggtgaggaccattcaaaataaaaacaactaatgatggtgtggaactcttttcagTTTGCAGGAGGCTTTGATGCAGAGAGCATGAAGGCTTTTGAAGAACTAAGGAGCCGCATCCAAACCTCTCAAGCTGGTGAAGATAGCAAATCAGAAACTT
species | Glycine max |
transcript | GLYMA01G22620.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAGAGTTTTTGGTTCTGCAAGGTGTGCGTTTCGCTTTCCGTGTCCATCAG TTTGCAGGAGGCTTTGATGCAGAGAGCATGAAGGCTTTTGAAGAACTAAGGEST: gi|192294897|gb|FG987586.1|FG987586
genomic: GAGAGTTTTTGGTTCTGCAAGGTGTGCGTTTCGCTTTCCGTGTCCATCAGgtaattctat ... ctcttttcagTTTGCAGGAGGCTTTGATGCAGAGAGCATGAAGGCTTTTGAAGAACTAAGG
EST: GAGAGTTTTTGGTTCTGCAAGGTGTGCGTTTCGCTTTCCGTGTCCATCAG TTTGCAG-AGGCTTTGATGCAGAGAGCATGAAAGCTTTTGAAGAACTAAAGEST: gi|192309845|gb|FK001389.1|FK001389
genomic: GAGAGTTTTTGGTTCTGCAAGGTGTGCGTTTCGCTTTCCGTGTCCATCAGgtaattctat ... ctcttttcagTTTGCAGGAGGCTTTGATGCAGAGAGCATGAAGGCTTTTGAAGAACTAAGG
EST: GAGAGTTTTTGGTTCTGCAAGGTGTGCGTTTCGCTTTCCGTATCCATCAG TTTGCAGGAGGCTTTGATGCAGAGAGCATGAAGGCTTTTGAAGAACTAAGGEST: gi|31305545|gb|CD390748.1|CD390748
genomic: GAGAGTTTTTGGTTCTGCAAGGTGTGCGTTTCGCTTTCCGTGTCCATCAGgtaattctat ... ctcttttcagTTTGCAGGAGGCTTTGATGCAGAGAGCATGAAGGCTTTTGAAGAACTAAGG
EST: GAGAGTTTTTGGTTCTGCAAGGTGTGCGTTTCGCTTTCCGTGTCCATCAG TTTGCAGGAGGCTTTGATGCAGAGAGCATGAAGGCTTTTGAAGAACTAAGG
genomic: GAGAGTTTTTGGTTCTGCAAGGTGTGCGTTTCGCTTTCCGTGTCCATCAGgtaattctat ... ctcttttcagTTTGCAGGAGGCTTTGATGCAGAGAGCATGAAGGCTTTTGAAGAACTAAGG
tggtgaggaccattcaaaataaaaacaactaatgatggtgtggaactcttttcagTTTGCAGGAGGCTTTGATGCAGAGAGCATGAAGGCTTTTGAAGAACTAAGGAGCCGCATCCAAACCTCTCAAGCTGGTGAAGATAGCAAATCAGAAACTT
aactaat putative branch site (score: 2)
ctcttttc putative PPT
attcaaaataaaaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatgtgaaaatttgttgaacacccggaacaatacacactaatgatggtgaggaccattcaaaataaaaacaactaatgatggtgtggaactcttttcagTTTGCAGGAGGCTTTGATGCAGAGAGCATGAAGGCTTTTGAAGAACTAAGGAGCCGCATCCAAACCTCTCAAGCTGGTGAAGATAGCAAATCAGAAACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - aacaccc
- - - - - - - - - - - - - - - - tacacac
- - - - - - - - - - - - - - - - - - - - - -gatggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - ccattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgtg