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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttggggtgtgtcctgccaataagacgtggaaaatctcttggggtcagaacaatatgatctgtttttctgttcagtgttatattgccatgtaattttgcagGTTACCATTTCGGTGAAGTACTTTATGGCCGATATGAAGTCATTGCAGCTCATGGGAGGGGTGTCTTTTCAGCAGTGGTCCGGGCAAAAGATCTTAAAAA

Basic information

species Glycine max
transcript GLYMA01G20810.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G20810.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G147811_T01 (Zea mays), 3'ss of exon 6
ttggggtgtgtcctgccaataagacgtggaaaatctcttggggtcagaacaatatgatctgt-ttttctgttcagt--gttatattgccat-gtaattttgcagGTTACCATTTCGGTGAAGTACTTTATGGCCGATATGAAGTCATTGCAGCTCATGGGAGGGGTGTCTTTTCAGCAGTGGTCCGGGCAAAAGATCTTAAAAA
     ||  ||  ||| | |   | ||  |   |  ||||    |  |    | |   |||| || ||  |||| |   || | |||   | |  ||| ||||| ||| |  ||||| ||| | ||  ||||||| |||||| |||| ||||| ||||||| |||||| || ||| |||| || ||||||||||||||||||  
-----gtaagttatgcta-tcttatgttcatttttccttgccagcttattgttctctcctgtgttgtccattcattcatttttcttgtttttgctattgtgcagCTTATCGGTTCGGAGAATTGCTGGATGGCCGTTATGAAATCATAGCAGCACATGGGAAGGGTGTGTTCTCAACAGTTGTGCGGGCAAAAGATCTTAAAGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193406996|gb|FK375227.1|FK375227
EST:     TTCACGACAATTGGGATGATGCAGAGGGTTATTACA                         GTTACCATTTCGGTGAAGTACTTTATGGCCGATATGAAGTCATTGCAGCTC
genomic: TTCACGACAATTGGGATGATGCAGAGGGTTATTACAgtaagttatt ... aattttgcagGTTACCATTTCGGTGAAGTACTTTATGGCCGATATGAAGTCATTGCAGCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaacaatatgatctgtttttctgttcagtgttatattgccatgtaattttgcagGTTACCATTTCGGTGAAGTACTTTATGGCCGATATGAAGTCATTGCAGCTCATGGGAGGGGTGTCTTTTCAGCAGTGGTCCGGGCAAAAGATCTTAAAAA
                                         atgtaatttt  TA-rich tract