1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aattaactatcaaataagtgaaattcttaccataaatttattgctatgctgtgaatttacatgaatgcttatttgaaattttgaataaccttttctgcagAAGGTAGTGTTGAAGACTAGCACTGCTAAGGCCGCAACCTTAGACATCCTCACCACACATTGTATACCTTCTGCGATGTCTGATGACCTGAAGACATAAA
species | Glycine max |
transcript | GLYMA01G16820.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTGAGAGCTGTGATGATGATTATCTAAAGTTTGATCTGGAATACCAACAG AAGGTAGTGTTGAAGACTAGCACTGCTAAGGCCGCAACCTTAGACATCCTCEST: gi|16348581|gb|BI974176.1|BI974176
genomic: TTGAGAGCTGTGATGATGATTATCTAAAGTTTGATCTGGAATACCAACAGgtttactctc ... ttttctgcagAAGGTAGTGTTGAAGACTAGCACTGCTAAGGCCGCAACCTTAGACATCCTC
EST: TTGAGAGCTGTGATGATGATTATCTAAAGTTTGATCTGGAATACCAACAG AAGGTAGTGTTGAAGACTAGCACTGCTAAGGCCGC
genomic: TTGAGAGCTGTGATGATGATTATCTAAAGTTTGATCTGGAATACCAACAGgtttactctc ... ttttctgcagAAGGTAGTGTTGAAGACTAGCACTGCTAAGGCCGC
atgctgtgaatttacatgaatgcttatttgaaattttgaataaccttttctgcagAAGGTAGTGTTGAAGACTAGCACTGCTAAGGCCGCAACCTTAGACATCCTCACCACACATTGTATACCTTCTGCGATGTCTGATGACCTGAAGACATAAA
gaataac putative branch site (score: 2)
ccttttctgc CT-rich tract
ttatttgaaattttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattaactatcaaataagtgaaattcttaccataaatttattgctatgctgtgaatttacatgaatgcttatttgaaattttgaataaccttttctgcagAAGGTAGTGTTGAAGACTAGCACTGCTAAGGCCGCAACCTTAGACATCCTCACCACACATTGTATACCTTCTGCGATGTCTGATGACCTGAAGACATAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - -cttacca
- - - - - - - - - - - - - - - - - - - - - -ctatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataac