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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcattccccaacaaataaccccttttggtaaagttacgatttctcaatcaaataacctttgctatatgctcctgtagGTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATCTTTAGTCTTCATACATTAATCTTTGCCACATCGAGTATTTTGGCTTTCATTCTCGTCAGA

Basic information

species Glycine max
transcript GLYMA01G09400.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5666780|gb|AI930816.1|AI930816
EST:     ACAGATGAGCTTTGCAACAACTGCTCCCCTTACTAGCCAAGATTTTGATG                         GTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATCTTTAGTCTTCA
genomic: ACAGATGAGCTTTGCAACAACTGCTCCCCTTACTAGCCAAGATTTTGATGgtatgcattc ... gctcctgtagGTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATCTTTAGTCTTCA
EST: gi|6341849|gb|AW164673.1|AW164673
EST:     ACAGATGAGCTTTGCAACAACTGCTCCCCTTACTAGCCAAGATTTTGATG                         GTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATCTTTAGTCTTCA
genomic: ACAGATGAGCTTTGCAACAACTGCTCCCCTTACTAGCCAAGATTTTGATGgtatgcattc ... gctcctgtagGTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATCTTTAGTCTTCA
EST: gi|7796861|gb|AW782255.1|AW782255
EST:     AGCCAAGATTTTGATG                         GTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATCTTTAGTCTTCA
genomic: AGCCAAGATTTTGATGgtatgcattc ... gctcctgtagGTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATCTTTAGTCTTCA
EST: gi|22927847|gb|BU544986.1|BU544986
EST:     ACAGATGAGCTTTGCAACAACTGCTCCCCTTACTAGCCAAGATTTTGATG                         GTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATCTTTAGTCTTCA
genomic: ACAGATGAGCTTTGCAACAACTGCTCCCCTTACTAGCCAAGATTTTGATGgtatgcattc ... gctcctgtagGTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATCTTTAGTCTTCA
EST: gi|193340719|gb|FK308340.1|FK308340
EST:     ACAGATGAGCTTTGCAACAACTGCTCCCCTTACTAGCCAAGATTTTGATG                         GTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGTATCTTTAGTCTTC
genomic: ACAGATGAGCTTTGCAACAACTGCTCCCCTTACTAGCCAAGATTTTGATGgtatgcattc ... gctcctgtagGTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTG-ATCTTTAGTCTTC
EST: gi|22926926|gb|BU544065.1|BU544065
EST:     ACAGATGAGCTTTGCAACAACTGCTCCCCTTACTAGCCAAGATTTTGATG                         GTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATCTTTAGTCTTCA
genomic: ACAGATGAGCTTTGCAACAACTGCTCCCCTTACTAGCCAAGATTTTGATGgtatgcattc ... gctcctgtagGTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATCTTTAGTCTTCA
EST: gi|15203048|gb|BI425816.1|BI425816
EST:     ACAGATGAGCTTTGCAACAACTGCTCCCCTTACTAGCCAAGATTTTGATG                         GTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATCTTTAGTCTTCA
genomic: ACAGATGAGCTTTGCAACAACTGCTCCCCTTACTAGCCAAGATTTTGATGgtatgcattc ... gctcctgtagGTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATCTTTAGTCTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttggtaaagttacgatttctcaatcaaataacctttgctatatgctcctgtagGTACTGGGCCAGCAAGTCAGATGAAAGTTGAACTTTGATCTTTAGTCTTCATACATTAATCTTTGCCACATCGAGTATTTTGGCTTTCATTCTCGTCAGA
                           aaataac  putative branch site (score: 2)
                                            tgctcct  putative PPT
                       aatcaaataa  TA-rich tract