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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaccattaaaactcgcatggatatttactaaaaatatattctttctattctcccattgcagaccatgtttggactcacagtttggtgttattttatcagGTGATGATTCCTGAGGCATTTGCCATTGTCTTGGCACCAAATGATACCTCAAG

Basic information

species Glycine max
transcript GLYMA01G03710.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G03710.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv01s0127g00710.t01 (Vitis vinifera), 3'ss of exon 7
-taaccattaaaactcgcatggatattt--actaaaaatatattctttctattctcccat-tgcagaccatgtttggactcacagtttggtgttattttatcagGTGATGATTCCTGAGGCATTTGCCATTGTCTTGGCACCAAATGATACCTCAAG
   |  | |   |  | | |||| ||||  |||  ||  || || |||  |||| |   | |||  | ||  |  ||   |||  |    |   | ||| |||||||||| | |||||||| |||||||||||| |||| |||| ||||||||||||
tggattacttgcaaactc-tggaaatttgaactgcaatgattttgttttgattcccttgtatgctaatcagat--ggctccaccatcatttaacacttt-tcagGTGATGGTGCCTGAGGCTTTTGCCATTGTCATGGCTCCAACTGATACCTCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctattctcccattgcagaccatgtttggactcacagtttggtgttattttatcagGTGATGATTCCTGAGGCATTTGCCATTGTCTTGGCACCAAATGATACCTCAAG
                           gactcac  putative branch site (score: 2)
                                           ttatttt  putative PPT
                                         tgttattttat  TA-rich tract