Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttgttgtgctgcagctgctgctaaactgatattttgcctcagtcattaatgtgaactaataatatatactttttctacatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCTTTTCACTCCGTGTCAAAAGGTTATTATGGTGAATGTGGACAGCGAGGTG

Basic information

species Glycine max
transcript GLYMA01G03260.3
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G03260.3 (Glycine max), 3'ss of exon 8
lower sequence: AT1G23310.1 (Arabidopsis thaliana), 3'ss of exon 8
gtatgcttgttgtgctgcagctgctgctaaactgatattttgcctcagtcattaatgtgaactaataatatatactttttctacatgaga-agGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCTTTTCACTCCGTGTCAAAAGGTTATTATGGTGAATGTGGACAGCGAGGTG
||  ||||  | |  |     |  ||     || |  || ||||| | |  | |       ||  | |||    | || |  | |    | |||||||||||||  ||||  | ||  | ||||||||||| |||||| | ||||||||| | || || ||||| ||||  ||||||||||||||||||||||
gttagctt-ctatatttggtttcatgt--gtctaaccttgtgcctgatttgtgatctc--tcttttgatacgaccattcttaaaaaatcatagGTTTTGATGGAAATGGGTTCGCCGTTCAGCAAGGAAGTTCAGCTTGTATCTTTTCACACAGTCTCTAAAGGATATTGGGGTGAATGTGGACAGCGAGGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208191199|gb|GD989187.1|GD989187
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
EST: gi|15815783|gb|BI788058.1|BI788058
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
EST: gi|20498717|gb|BQ273647.1|BQ273647
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
EST: gi|9902378|gb|BE611346.1|BE611346
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTGTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
EST: gi|20814673|gb|BQ299151.1|BQ299151
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
EST: gi|51337166|gb|CO981032.1|CO981032
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
EST: gi|7234812|gb|AW570145.1|AW570145
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
EST: gi|31561480|gb|CD487318.1|CD487318
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
EST: gi|23064381|gb|BU579154.1|BU579154
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
EST: gi|7796142|gb|AW781539.1|AW781539
EST:     ACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
EST: gi|26269528|gb|CA820591.1|CA820591
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCTTTCTTATTTCT
genomic: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
EST: gi|20498442|gb|BQ273372.1|BQ273372
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAG-AAGTCCAGCTTATTTCT
genomic: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
EST: gi|193366000|gb|FK329021.1|FK329021
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGC
genomic: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGC
EST: gi|120532614|gb|EH260747.1|EH260747
EST:     ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG                         GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAGgtatgcttgt ... acatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgcctcagtcattaatgtgaactaataatatatactttttctacatgagaagGTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCTTTTCACTCCGTGTCAAAAGGTTATTATGGTGAATGTGGACAGCGAGGTG
                      aactaat  putative branch site (score: 2)
                                     ctttttctac  putative PPT
             attaatgtgaactaat  TA-rich tract