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...aatatgtgatttagcctttggggtatctttactgtgcattcttttttcattaaattttatttgtcatataatcaacaatttactttgcatttatcttcagGTCCACACTGCACAGAGTTCTAGGAAACGGTCAAGGAAGATATTCT
species | Glycine max |
transcript | GLYMA01G01170.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATAGTGAATCTTGGTGACATGCTGGAGCGCTGGAGCAACTGTGTTTTTAA GTCCACACTGCACAGAGTTCTAGGAAACGGTCAAGGAAGATATTCTEST: gi|254332071|gb|GR846274.1|GR846274
genomic: ATAGTGAATCTTGGTGACATGCTGGAGCGCTGGAGCAACTGTGTTTTTAAgtaagaaatc ... ttatcttcagGTCCACACTGCACAGAGTTCTAGGAAACGGTCAAGGAAGATATTCT
EST: ATAGTGAATCTTGGTGACATGCTGGAGCGCTGGAGCAACTGTGTTTTTAA GTCCACACTGCACAGAGTTCTAGGAAACGGTCAAGGAAGATATTCTEST: gi|254330589|gb|GR841854.1|GR841854
genomic: ATAGTGAATCTTGGTGACATGCTGGAGCGCTGGAGCAACTGTGTTTTTAAgtaagaaatc ... ttatcttcagGTCCACACTGCACAGAGTTCTAGGAAACGGTCAAGGAAGATATTCT
EST: ATAGTGAATCTTGGTGACATGCTGGAGCGCTGGAGCAACTGTGTTTTTAA GTCCACACTGCACAGAGTTCTAGGAAACGGTCAAGGAAGATATTCTEST: gi|208255537|gb|GE055220.1|GE055220
genomic: ATAGTGAATCTTGGTGACATGCTGGAGCGCTGGAGCAACTGTGTTTTTAAgtaagaaatc ... ttatcttcagGTCCACACTGCACAGAGTTCTAGGAAACGGTCAAGGAAGATATTCT
EST: ATAGTGAATCTTGGTGACATGCTGGAGCGCTGGAGCAACTGTGTTTT-AA GTCCACACTGCACAGAGTTCTAGGAAACGGTCAAGGAA
genomic: ATAGTGAATCTTGGTGACATGCTGGAGCGCTGGAGCAACTGTGTTTTTAAgtaagaaatc ... ttatcttcagGTCCACACTGCACAGAGTTCTAGGAAACGGTCAAGGAA
ttcattaaattttatttgtcatataatcaacaatttactttgcatttatcttcagGTCCACACTGCACAGAGTTCTAGGAAACGGTCAAGGAAGATATTCT
tttatcttc CT-rich tract
taaattttatttgtca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatatgtgatttagcctttggggtatctttactgtgcattcttttttcattaaattttatttgtcatataatcaacaatttactttgcatttatcttcagGTCCACACTGCACAGAGTTCTAGGAAACGGTCAAGGAAGATATTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA