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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtgataccatatccgattatccggaggcttgttaacaggctataaaatgttgttatcccaagtcgggaatagtgattcttgtcatcaatgtcaatgatgccatttgttttggttgcagACCGATGCTTTCTTCAAAACTAATCTTTCCGATGTATATGCTGTTGGTGATGTTGCTACTTTCCCTTTGAAATTATACGGTGAATTGAGAAGAGTTGAAC

Basic information

species Glycine max
transcript GLYMA0169S00210.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA0169S00210.1 (Glycine max), 3'ss of exon 8
lower sequence: AT3G52880.1 (Arabidopsis thaliana), 3'ss of exon 8
gtcagtgataccatatccgattatccggaggcttgttaacaggctataaaatgttgttatcccaagtcgggaatagtgattcttgtcatcaatgtcaatgatgccatttgttttggttgcagACCGATGCTTTCTTCAAAACTAATCTTTCCGATGTATATGCTGTTGGTGATGTTGCTACTTTCCCTTTGAAATTATACGGTGAATTGAGAAGAGTTGAAC
                    ||||| |      ||       |        | || |||||||    |    ||  |||||    || |  |  |  |       |  |||||      ||||||||||| ||||||||||| | | || | ||||| || ||||||||||| ||||||||||||||||||||| | ||||| ||  ||||||| || || |
----------------gtatttatctg-----ctgcctgtgcgtctcttcttcttcttatcccgtacc----attctgatttggatcttttaaattgactgc-ttaactgtttca--cacagACCGATGCATTCTTCAAAACAAGTGTTCCAGATGTTTACGCTGTTGGTGACGTTGCTACTTTCCCTTTGAAAATGTACGGAGACGTGAGAAGGGTCGAGC

upper sequence: GLYMA0169S00210.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv08s0007g03610.t01 (Vitis vinifera), 3'ss of exon 8
gtcagtgataccatatccgattatccggaggcttgttaacaggctataaaa---tgttgttatcccaa-gtcgggaatagtgattcttgtcatcaatgtcaatgatgccatttgttttggttgcagACCGATGCTTTCTTCAAAACTAATCTTTCCGATGTATATGCTGTTGGTGATGTTGCTACTTTCCCTTTGAAATTATACGGTGAATTGAGAAGAGTTGAAC
                    |  |||  |       |||   | |||| |    | | | ||     | |||  | ||||   || |    |     |   || |  |   |   ||||  ||||||| ||||  ||||||||||| | | || | |||||||||||||| || |||||||||||||||||  ||||||| |||  |||| | |||||||||||||
-------------------gtcgtcccaaaa-----taatgagttatacatatctatagctagtttgatgtcttggatagcatttttgaaaacttgaggtcatcactctgatc--tttgactgcagACTGATGAATTCTTCAAAACAAGTGTTCCTGATGTATATGCTGTGGGAGATGTTGCTACTTTCCCACTGAAATTGTACAATGAAATTAGAAGAGTTGAAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8403523|gb|BE059157.1|BE059157
EST:     GAGAAGGGTGGAATCAAG                         ACCGATGCTTTCTTCAAAACTAATCTTTCCGATGTATATGCTGTTGGTGAT
genomic: GAGAAGGGTGGAATCAAGgtcagtgata ... ttggttgcagACCGATGCTTTCTTCAAAACTAATCTTTCCGATGTATATGCTGTTGGTGAT
EST: gi|308098764|gb|HO760505.1|HO760505
EST:     AAACAGCCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAG                         ACCGATGCTTTCTTCAAAACTAATCTTTCCGATGTATATGCTGTTGGTGAT
genomic: AAACAGCCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAGgtcagtgata ... ttggttgcagACCGATGCTTTCTTCAAAACTAATCTTTCCGATGTATATGCTGTTGGTGAT
EST: gi|21677606|gb|BQ629957.1|BQ629957
EST:     AAACAGCCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAG                         ACCGATGCTTTCTTCAAAACTAATCTTTCCGATGTATATGCTGTTGGTGAT
genomic: AAACAGCCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAGgtcagtgata ... ttggttgcagACCGATGCTTTCTTCAAAACTAATCTTTCCGATGTATATGCTGTTGGTGAT
EST: gi|151398497|gb|EV268368.1|EV268368
EST:     AAACAGCCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAG                         ACCGATGCTTTCTTCAAAACTAATCTTTCCGATGTATATGCTGTTGGTGAT
genomic: AAACAGCCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAGgtcagtgata ... ttggttgcagACCGATGCTTTCTTCAAAACTAATCTTTCCGATGTATATGCTGTTGGTGAT
EST: gi|26057696|gb|CA800610.1|CA800610
EST:     AAACAGCCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAG                         ACCGATGCTTTCTTCAAAACTAATCTTTCCGATGTATATGCTGTTGGTGAT
genomic: AAACAGCCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAGgtcagtgata ... ttggttgcagACCGATGCTTTCTTCAAAACTAATCTTTCCGATGTATATGCTGTTGGTGAT
EST: gi|151398847|gb|EV268718.1|EV268718
EST:     AAACAGCCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAG                         ACCGATGCTTTCTTCAAAACTAATCTTTCCGATGTATATGCTGTTGGTGAT
genomic: AAACAGCCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAGgtcagtgata ... ttggttgcagACCGATGCTTTCTTCAAAACTAATCTTTCCGATGTATATGCTGTTGGTGAT
EST: gi|19938647|gb|BQ081820.1|BQ081820
EST:     AAACAGCCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAG                         ACCGATGCTTTCTTCAAAACTAATCTTTCCGATGTATATGCTGTTGGTGAT
genomic: AAACAGCCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAGgtcagtgata ... ttggttgcagACCGATGCTTTCTTCAAAACTAATCTTTCCGATGTATATGCTGTTGGTGAT
EST: gi|23725657|gb|BU760790.1|BU760790
EST:     AAACAGCCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAG                         ACCGATGCTTTCTTCAAAACTAATCTTTCCGATGTATATGCTGTTGGTGAT
genomic: AAACAGCCTTAGTCAAAGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAGgtcagtgata ... ttggttgcagACCGATGCTTTCTTCAAAACTAATCTTTCCGATGTATATGCTGTTGGTGAT
EST: gi|27424500|gb|CA936020.1|CA936020
EST:     AGAGGAGAAGGGTGGAATCAAG                         ACCGATGCTTTCTTCAAAACTAATCTTTCCGATGTATATGCTGTTGGTGAT
genomic: AGAGGAGAAGGGTGGAATCAAGgtcagtgata ... ttggttgcagACCGATGCTTTCTTCAAAACTAATCTTTCCGATGTATATGCTGTTGGTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgggaatagtgattcttgtcatcaatgtcaatgatgccatttgttttggttgcagACCGATGCTTTCTTCAAAACTAATCTTTCCGATGTATATGCTGTTGGTGATGTTGCTACTTTCCCTTTGAAATTATACGGTGAATTGAGAAGAGTTGAAC
                                       tttgtttt  CT-rich tract
                                      atttgtttt  TA-rich tract