1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttgcgtttagattgatgtattggttggtctaacctaaattgacatctttcttttcccaagtttatttgtttctcgtgtgattaaattttatttactgcagTTAAACCTTCCCTATCAAGTTGTTTCCATTGTATCTGGTGCTTTGAATGATGCTGCAGCAAAGAAGTATGATCTAGAAGCATGGTTTCCAGCCTCTCAAG
species | Glycine max |
transcript | GLYMA20G37700.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGGACATACATGAGGAAATGCTGAAGAACTCTGAAGATTTCTACAAAGCG TTAAACCTTCCCTATCAAGTTGTTTCCEST: gi|151396984|gb|EV266857.1|EV266857
genomic: GGGACATGCATGAGGAAATGCTGAAGAACTCTGAAGATTTCTACAAAGCGgtatgataca ... tttactgcagTTAAACCTTCCCTATCAAGTTGTTTCC
EST: GGGACATGCATGAGGAAATGCTGAAGAACTCTGAAGATTTCTACAAAGCG TTAAACCTTCCCTATCAAGTTGTTTCCATTGTATCTGGTGCTTTGAATGATEST: gi|9564750|gb|BE474259.1|BE474259
genomic: GGGACATGCATGAGGAAATGCTGAAGAACTCTGAAGATTTCTACAAAGCGgtatgataca ... tttactgcagTTAAACCTTCCCTATCAAGTTGTTTCCATTGTATCTGGTGCTTTGAATGAT
EST: GGGACATGCATGAGGAAATGCTGAAGAACTCTGAAGATTTCTACAAAGCG TTAAACCTTCCCTATCAAGTTGTTTCCATTGTATCTGGTGCTTTGAATGATEST: gi|192296773|gb|FG993071.1|FG993071
genomic: GGGACATGCATGAGGAAATGCTGAAGAACTCTGAAGATTTCTACAAAGCGgtatgataca ... tttactgcagTTAAACCTTCCCTATCAAGTTGTTTCCATTGTATCTGGTGCTTTGAATGAT
EST: GGGACATGCATGAGGAAATGCTGAAGAACTCTGAAGATTTCTACAAAGCG TTAAACCTTCCCTATCAAGTTGTTTCCATTGTATCTGGTGCTTTGAATGATEST: gi|15286655|gb|BI470546.1|BI470546
genomic: GGGACATGCATGAGGAAATGCTGAAGAACTCTGAAGATTTCTACAAAGCGgtatgataca ... tttactgcagTTAAACCTTCCCTATCAAGTTGTTTCCATTGTATCTGGTGCTTTGAATGAT
EST: TGAAGATTTCTACAAAGCG TTAAACCTTCCCTATCAAGTTGTTTCCATTGTATCTGGTGCTTTGAATGATEST: gi|192296772|gb|FG993070.1|FG993070
genomic: TGAAGATTTCTACAAAGCGgtatgataca ... tttactgcagTTAAACCTTCCCTATCAAGTTGTTTCCATTGTATCTGGTGCTTTGAATGAT
EST: GGGACATGCATGAGGAAATGCTGAAGAACTCTGAAGATTTCTACAAAGCG TTAAACCTTCCCTATCAAGTTGTTTCCATTGTATCTGGTGCTTTGAATGATEST: gi|13788033|gb|BG650625.1|BG650625
genomic: GGGACATGCATGAGGAAATGCTGAAGAACTCTGAAGATTTCTACAAAGCGgtatgataca ... tttactgcagTTAAACCTTCCCTATCAAGTTGTTTCCATTGTATCTGGTGCTTTGAATGAT
EST: GGGACATGCATGAGGAAATGCTGAAGAACTCTGAAGATTTCTACAAAGCG TTAAATCTTCCCTATCAAGTTGTTTCCATTGTATCTGGTGCATTGAATGATEST: gi|15814019|gb|BI786294.1|BI786294
genomic: GGGACATGCATGAGGAAATGCTGAAGAACTCTGAAGATTTCTACAAAGCGgtatgataca ... tttactgcagTTAAACCTTCCCTATCAAGTTGTTTCCATTGTATCTGGTGCTTTGAATGAT
EST: GGGACATGCATGAGGAAATGCTGAAGAACTCTGAAGATTTCTACAAAGCG TTAAACCTTCCCTATCAAGTTGTTTCCATTGTATCTGGTGCTTTGAATGAT
genomic: GGGACATGCATGAGGAAATGCTGAAGAACTCTGAAGATTTCTACAAAGCGgtatgataca ... tttactgcagTTAAACCTTCCCTATCAAGTTGTTTCCATTGTATCTGGTGCTTTGAATGAT
ctttcttttcccaagtttatttgtttctcgtgtgattaaattttatttactgcagTTAAACCTTCCCTATCAAGTTGTTTCCATTGTATCTGGTGCTTTGAATGATGCTGCAGCAAAGAAGTATGATCTAGAAGCATGGTTTCCAGCCTCTCAAG
ttttattt CT-rich tract
tgtgattaaattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcgtttagattgatgtattggttggtctaacctaaattgacatctttcttttcccaagtttatttgtttctcgtgtgattaaattttatttactgcagTTAAACCTTCCCTATCAAGTTGTTTCCATTGTATCTGGTGCTTTGAATGATGCTGCAGCAAAGAAGTATGATCTAGAAGCATGGTTTCCAGCCTCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - tgatgta
- - - - - - - - - - tggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcgtgtg