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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaaaaattttattggttgaaaaaggaaaataatttgaagttctaaagcatttattatcttttttttctagGGAATGTGGATTAGCACATAAAACAATAATTTTTGTTTTGGATGAGTTTGACCTGTTTGCTCAG

Basic information

species Glycine max
transcript GLYMA20G25850.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25850.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os01g49010.1 (Oryza sativa), 3'ss of exon 6
--------------------gtgagtaa--aaattttattggttgaaaaaggaaaataatttgaagttcta---aagcatttattatcttttttttctagGGAATGTGGATTAGCACATAAAACAATAATTTTTGTTTTGGATGAGTTTGACCTGTTTGCTCAG
                     |||| |     |  | || |    | |       ||  ||  || || |    |  ||| | |   || | || |  ||||| |||||| |||| || || ||||||||||||||  | || ||||||||||| |||||||||
gtaagtgaagtgttaagatgatgagcatctgtacatcatagagacatactccttgattcttgaaatttatgtccagtcatctgtatcctctcttctgcagGGAGTGTGGACTAGCTCACAAGACAATAATTTTTGTCCTAGAAGAGTTTGACCTCTTTGCTCAG

upper sequence: GLYMA20G25850.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv01s0011g04400.t01 (Vitis vinifera), 3'ss of exon 6
--------------------------------------------------------------gtgagtaaaaattttattggttgaa---aaaggaaaataatttgaagttctaaagcattta-ttatct----tttttttctagGGAATGTGGATTAGCACATAAAACAATAATTTTTGTTTTGGATGAGTTTGACCTGTTTGCTCAG---------------------
                                                               | |  |  |   || ||||||  |   ||| |    || | |     | | | | ||||  |||| |    | | ||   ||||| ||||||||||| || || ||||| |||||||| ||||||||||||||| | ||  |||||                     
gtgagtgtacacatttggtaggtgattgtgtcctccgtcagtgctgaggcttgttcattttgctaaagatgaccatttttggtttcatggaaaagttgttattctctttctttcatgaattttcttatttgtgatctcttgtcagGGAGTGTGGATTAGCTCACAAGACAATCATTTTTGTATTGGATGAGTTTGACTTCTTCACTCAGGCAAGATTACCTCTCTCTCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaaaaaggaaaataatttgaagttctaaagcatttattatcttttttttctagGGAATGTGGATTAGCACATAAAACAATAATTTTTGTTTTGGATGAGTTTGACCTGTTTGCTCAG
                        ttctaaa  putative branch site (score: 2)
                                catttattatcttttt  CT-rich tract
                        ttctaaagcatttatt  TA-rich tract