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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcattgtcttctgttgcataatcttagtcatttgttgctctgtctccagcaagtgaacgaaagtgtactaacatgtattctcaatttttgtccctacagAAGCGTGATGACGCTCGACAGTTTATGAAGTTTCTTCATCCTGATCTTGGTGTTG

Basic information

species Glycine max
transcript GLYMA20G25830.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25830.2 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os01g02890.1 (Oryza sativa), 3'ss of exon 4
gtcattgtcttctgttgcataatcttagtcatttgttgctctgtctccagcaagtgaacgaaagtgtac-taacatgtattctcaattt---ttgtccctacagAAGCGTGATGACGCTCGACAGTTTATGAAGTTTCTTCATCCTGATCTTGGTGTTG
      |  || ||   |||     | || ||   |  |         || |    | |   ||| | | |   ||  || |||  ||    ||   | | ||||  |||||||| ||| | || |||||||||| |||||| ||||||||||||||||
----gagaattgtgcatcattggtcttgttataaatatcataaaagagagaacaaaacctgtagtttgcatgggattcatactctgttccacttaatcttgcagACCCGTGATGATGCTAGGCAATTTATGAAGTATCTTCACCCTGATCTTGGTGTTG

upper sequence: GLYMA20G25830.2 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G095757_T02 (Zea mays), 3'ss of exon 4
gtcattgtcttctgttgcataatcttagtcatttg-ttgctctgtctccagcaagtgaacgaaagtgtactaacatgtattctca--atttttgtccctacagAAGCGTGATGACGCTCGACAGTTTATGAAGTTTCTTCATCCTGATCTTGGTGTTG
  || | |        |    |  | ||||    | ||     |  |  |||| |  |||  | || |   |     |||| |||  |  |||||   | ||||  |||||||| ||| | || || ||||||| ||||||||||||||||||||| |
-acagtattgcagcaagtcagagttcagtcgcaagattttaaagagtagagcaggaaaactta-gtatggcatttcatattttcattaactttgttt-tgcagACTCGTGATGATGCTAGGCAATTCATGAAGTATCTTCATCCTGATCTTGGTGTCG

upper sequence: GLYMA20G25830.2 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G110834_T02 (Zea mays), 3'ss of exon 4
--gtcattgtcttctgttgcataatcttagtcatttgttgctctgtctccagcaagtgaacgaaagtgtactaacatgtattctcaatttttgtccctacagAAGCGTGATGACGCTCGACAGTTTATGAAGTTTCTTCATCCTGATCTTGGTGTTG
   |||     |     | ||    |  ||   ||           |  ||  | ||   |   | |||  |  ||| | |||   |  |||||   | ||||  |||||||| ||| | || || ||||||| ||||||||||||||||||||| |
atttcagcaagtcagacttcaatggcaaagattttaaagagaagagcggcaaaatgtagtcatta-tgtcatttcatattttcatgaactttgttt-tgcagACTCGTGATGATGCTAGGCAATTCATGAAGTATCTTCATCCTGATCTTGGTGTCG

upper sequence: GLYMA20G25830.2 (Glycine max), 3'ss of exon 7
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 3'ss of exon 5
gtcattgtcttctgttgcataatcttagt--catttgttgctctgtc-tccagcaagtgaacgaaagtgt-actaacatgtattctcaatttttgtccctacagAAGCGTGATGACGCTCGACAGTTTATGAAGTTTCTTCATCCTGATCTTGGTGTTG
     ||| ||    || ||   |||     || || | | ||| |  |              ||||| |   ||  |    |||| ||| | |     | ||||| |||||||| ||||| || || ||||||||||| |||||||||||||||||||
---tgtgtttttccctgaatttccttgacaccaattatggatctttggtatgatttccagttaaaagtattgatagtagtctttctgaatctct-catttccagAAACGTGATGATGCTCGGCAATTCATGAAGTTTCTCCATCCTGATCTTGGTGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccagcaagtgaacgaaagtgtactaacatgtattctcaatttttgtccctacagAAGCGTGATGACGCTCGACAGTTTATGAAGTTTCTTCATCCTGATCTTGGTGTTG
                     tactaac  putative branch site (score: 0)
                                        tttttgtccct  putative PPT
                               tattctcaattttt  TA-rich tract