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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtgttttattataagctttcatttataataacctgcaaatttagtttttatcattttatgtttagtcatagctcttatcattttattcttgccatgtctctaactcaatatattgcagTCTCTTGGAAGCATAGTGGCATTTGAGGCTATGGTGTCCATAGCAACGATTGGCCTCTATATAGCTTATGCCTTACCTATATTCTTTAGGGTGACCTTGG

Basic information

species Glycine max
transcript GLYMA20G25680.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25680.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv01s0011g04210.t01 (Vitis vinifera), 3'ss of exon 7
gtacgtgttttattataagctttcatttataataacctgcaaatttagtttttatcattttatgtttagtcatagctcttatcattttattcttgccatgtctctaactcaatatattgcagTCTCTTGGAAGCATAGTGGCATTTGAGGCTATGGTGTCCATAGCAACGATTGGCCTCTATATAGCTTATGCCTTACCTATATTCTTTAGGGTGACCTTGG
                    |   | | ||  | |  |  |  |||    |  |     | ||| ||  ||    |  | | ||  | | |   |   |   |       ||| | |||||||| || |||||| | ||||||||| | || ||||| || || ||||| ||||| ||||| || ||||||||| | || || |||||||||||||||||||
------------------attccaagtcatgttgattttgacgtttcccctgcac----tcatgcttcttctcttccttcagcagctaaattaggtgctcatttgtttaaaatcttttgcagTCACTGGGAAGCCTTGTGGCATTTCAAGCCATGGTATCAATTGCAACTATTGGACTCTACATTGCTTATGCCCTCCCCATCTTCTTTAGGGTGACCTTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtcatagctcttatcattttattcttgccatgtctctaactcaatatattgcagTCTCTTGGAAGCATAGTGGCATTTGAGGCTATGGTGTCCATAGCAACGATTGGCCTCTATATAGCTTATGCCTTACCTATATTCTTTAGGGTGACCTTGG
                                  ctctaac  putative branch site (score: 2)
           ttatcattttattctt  TA-rich tract