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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtattttattactcataagctttcatttataataaccttttctctggtttgttaaaaagtggaaaactatgtctataactcaattgtaaatctattgcagTCTCTTGGAAGCATAGTAGCATTTGAGGCCATGGTGTCCATAGCAACAATTGGCCTCTATATTGCTTATGCCTTCCCTATATTCTTTAGGGTGACCTTGG

Basic information

species Glycine max
transcript GLYMA20G25670.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25670.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv01s0011g04210.t01 (Vitis vinifera), 3'ss of exon 7
-gtatgtattttattactcataagctttcatttataataaccttttctctggtttgttaaaaagtggaaaactatgtctataactcaattgtaaatctattgcagTCTCTTGGAAGCATAGTAGCATTTGAGGCCATGGTGTCCATAGCAACAATTGGCCTCTATATTGCTTATGCCTTCCCTATATTCTTTAGGGTGACCTTGG
  |     |  | ||  |  | |  ||||   |  | | |   ||  |||  |   | |  |  |   ||| || ||    |  |   ||  |||||| |||||||| || |||||| | || |||||| | |||||||| || || ||||| ||||| ||||| |||||||||||| |||| || |||||||||||||||||||
attccaagtcatgttgattttgacgtttcccctgcactcatgcttcttctcttccttcagcagct---aaattaggtgctcattt--gtttaaaatcttttgcagTCACTGGGAAGCCTTGTGGCATTTCAAGCCATGGTATCAATTGCAACTATTGGACTCTACATTGCTTATGCCCTCCCCATCTTCTTTAGGGTGACCTTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtttgttaaaaagtggaaaactatgtctataactcaattgtaaatctattgcagTCTCTTGGAAGCATAGTAGCATTTGAGGCCATGGTGTCCATAGCAACAATTGGCCTCTATATTGCTTATGCCTTCCCTATATTCTTTAGGGTGACCTTGG
                           ctataac  putative branch site (score: 3)
                                    aattgtaaatctatt  TA-rich tract