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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatttcccatttatcatattgattcttttagttgattcattagggaacttttggtgctgaaatctcataatttgattgaatgttacagGGAAAGCTCATTGAGATTCACTTCAGTGAAACTGGAAAAATATCTGGTGCTAATATTCAAACAT

Basic information

species Glycine max
transcript GLYMA20G23660.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G23660.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv10s0071g00210.t01 (Vitis vinifera), 3'ss of exon 6
-----------------------------------------------------------------------------------------gtaagatttcccatttatcatattgattcttttagttgattcattagggaacttttggtgctgaaatctcataatttgattgaatgtta--cagGGAAAGCTCATTGAGATTCACTTCAGTGAAACTGGAAAAATATCTGGTGCTAATATTCAAACAT
                                                                                          |||  |||    |||      ||    |   | || |  |  ||     |      ||| |   || |  |||| | | ||||  ||   ||||||||||| |||||||||||||| ||||||||||| |||||||| ||||| || |||||||| |
gtaagctacattttctttttcaatagcctgatttatccttatgttaacagttctatgttgaagattggcaccagcaattcttttcagaattaaagttttgtgttttatgctttt-ccccagtggtagtatttttttttgataggaagtggtagtat-tagtaatctaagtgaacatttttcagGGAAAGCTGATTGAGATTCACTTTAGTGAAACTGGGAAAATATCGGGTGCCAAGATTCAAACCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattcattagggaacttttggtgctgaaatctcataatttgattgaatgttacagGGAAAGCTCATTGAGATTCACTTCAGTGAAACTGGAAAAATATCTGGTGCTAATATTCAAACAT
                                    atttgat  putative branch site (score: 5)
                                 ataatttgattgaat  TA-rich tract