1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtacgttatatatgttggcatttctgccccttcctccttaaatcattcctcttcattcaacctcttgttttcctgggttagattgtagttttatttttccttgtttggtctgacctttgacagGTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCACCTGAGCTCATATTTGGCGCAACTGAATATACTTCAGCCATTGACATCT
species | Glycine max |
transcript | GLYMA20G22600.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG GTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCAEST: gi|12773850|gb|BG238777.1|BG238777
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
EST: CACACACTCACCAGGATAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG GTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCAEST: gi|193629894|gb|FK575020.1|FK575020
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
EST: TATGTGACTTTGGAAGTGCAAAGGTTTTG GTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCAEST: gi|19052551|gb|BM731218.1|BM731218
genomic: TATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
EST: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG GTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCAEST: gi|15287684|gb|BI471575.1|BI471575
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
EST: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG GTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCAEST: gi|14990268|gb|BI315941.1|BI315941
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
EST: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG GTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCAEST: gi|27426708|gb|CA938228.1|CA938228
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
EST: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG GTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCAEST: gi|11413300|gb|BF425311.1|BF425311
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
EST: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG GTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCAEST: gi|192296530|gb|FG991636.1|FG991636
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
EST: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG GTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCAEST: gi|16997007|gb|BM086379.1|BM086379
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
EST: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG GTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCAEST: gi|208183454|gb|GD981508.1|GD981508
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
EST: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG GTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCAEST: gi|15000029|gb|BI320843.1|BI320843
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
EST: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG GTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCAEST: gi|192321549|gb|FK012899.1|FK012899
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
EST: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG GTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCAEST: gi|193377439|gb|FK339255.1|FK339255
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
EST: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG GTAAAAGGCGAACEST: gi|14990090|gb|BI315763.1|BI315763
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGCGAAC
EST: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG GTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCAEST: gi|120492579|gb|EH220746.1|EH220746
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
EST: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG GTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCAEST: gi|9205156|gb|BE331380.1|BE331380
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
EST: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG GTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCAEST: gi|209699787|gb|BW655800.1|BW655800
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
EST: ACACACTCACCAGGTTAAATTATGTGACTTTGGAAAGTGCAA-GGTTTTG GTAAAAGGCGA-CCAAATATATCATACATATGTTCTAGATACTATAGAGCEST: gi|22525150|gb|BU083970.1|BU083970
genomic: ACACACTCACCAGGTTAAATTATGTGACTTTGGAA-GTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGC
EST: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG GTAAAAGGTGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCAEST: gi|13481244|gb|BG510587.1|BG510587
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
EST: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTG GTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
genomic: CACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGgtacgttata ... cctttgacagGTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCA
tttcctgggttagattgtagttttatttttccttgtttggtctgacctttgacagGTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCACCTGAGCTCATATTTGGCGCAACTGAATATACTTCAGCCATTGACATCT
gtctgac putative branch site (score: 3)
ccttt CT-rich tract
ttagattgtagtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgttatatatgttggcatttctgccccttcctccttaaatcattcctcttcattcaacctcttgttttcctgggttagattgtagttttatttttccttgtttggtctgacctttgacagGTAAAAGGCGAACCAAATATATCATACATATGTTCTAGATACTATAGAGCACCTGAGCTCATATTTGGCGCAACTGAATATACTTCAGCCATTGACATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA