1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtagtttgctaaatcatataaagagaaactgaaacttgtttctttgaagttaaaacgagtaagtactcgatgctttacccaattaagagaaatttccacttgtatgtttcagGTAAAATTATATATTATACCATTCCCCCAAATAGGGATCAAGGGGAACCTGCAGAGGTTAAGATAGTTTCTGAGTTTTCAAAGGAGTTTAACATTGATGA
species | Glycine max |
transcript | GLYMA20G17960.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGTTGACATTAATGCTGCTGCAAGAATCGTTCTTCATGATTGGAATGAAG GTAAAATTATATATTATACCATTCCCCCAAATAGGGATCAAGGGGAACCTGEST: gi|9203397|gb|BE329683.1|BE329683
genomic: AGTTGACATTAATGCTGCTGCAAGAATCGTTCTTCATGATTGGAATGAAGgtagtttgct ... tatgtttcagGTAAAATTATATATTATACCATTCCCCCAAATAGGGATCAAGGGGAACCTG
EST: AGTTGACATTAATGCTGCTGCAAGAATCGTTCTTCATGATTGGAATGAAG GTAAAATTATATATTATACCATTCCCCCAAATAGGGATCAAGGGGAACCTGEST: gi|51334997|gb|CO978863.1|CO978863
genomic: AGTTGACATTAATGCTGCTGCAAGAATCGTTCTTCATGATTGGAATGAAGgtagtttgct ... tatgtttcagGTAAAATTATATATTATACCATTCCCCCAAATAGGGATCAAGGGGAACCTG
EST: AGTTGACATTAATGCTGCTGCAAGAATCGTTCTTCATGATTGGAATGAAG GTAAAATTATATATTATACCATTCCCCCAAATAGGGATCAAGGGGAACCTG
genomic: AGTTGACATTAATGCTGCTGCAAGAATCGTTCTTCATGATTGGAATGAAGgtagtttgct ... tatgtttcagGTAAAATTATATATTATACCATTCCCCCAAATAGGGATCAAGGGGAACCTG
agtaagtactcgatgctttacccaattaagagaaatttccacttgtatgtttcagGTAAAATTATATATTATACCATTCCCCCAAATAGGGATCAAGGGGAACCTGCAGAGGTTAAGATAGTTTCTGAGTTTTCAAAGGAGTTTAACATTGATGA
aattaagagaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtttgctaaatcatataaagagaaactgaaacttgtttctttgaagttaaaacgagtaagtactcgatgctttacccaattaagagaaatttccacttgtatgtttcagGTAAAATTATATATTATACCATTCCCCCAAATAGGGATCAAGGGGAACCTGCAGAGGTTAAGATAGTTTCTGAGTTTTCAAAGGAGTTTAACATTGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG