1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...aaaagattgctgtttgcaatttgcagaacttgtgcctctgtagcattttaatcaagattctatttgacatatgacttttgatgttttgcttttctatcagACCTTCATTGACAAGTTCCGTTATAATGCGAAGAGGGCATCACTTGTTCAATCTAGAATCAAG
species | Glycine max |
transcript | GLYMA20G16170.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AACGTGCTAGATCTCATATGCAG ACCTTCATTGACAAGTTCCGTTATAATGCGAAGAGGGCATCACTTGTTCAAEST: gi|193655966|gb|FK606638.1|FK606638
genomic: AACGTGCTAGATCTCATATGCAGgtattatttt ... tttctatcagACCTTCATTGACAAGTTCCGTTATAATGCGAAGAGGGCATCACTTGTTCAA
EST: CAAAAAGCATTAGAGGCAAACGAACGTGCTAGATCTCATATGCAG ACCTTCATTGACAAGTTCCGTTATAATGCGAAGAGGGCATCACTTGTTCAA
genomic: CAAAAAGCATTAGAGGCAAACGAACGTGCTAGATCTCATATGCAGgtattatttt ... tttctatcagACCTTCATTGACAAGTTCCGTTATAATGCGAAGAGGGCATCACTTGTTCAA
ttttaatcaagattctatttgacatatgacttttgatgttttgcttttctatcagACCTTCATTGACAAGTTCCGTTATAATGCGAAGAGGGCATCACTTGTTCAATCTAGAATCAAG
ttttgcttttctatc CT-rich tract
attctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaagattgctgtttgcaatttgcagaacttgtgcctctgtagcattttaatcaagattctatttgacatatgacttttgatgttttgcttttctatcagACCTTCATTGACAAGTTCCGTTATAATGCGAAGAGGGCATCACTTGTTCAATCTAGAATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - -tgctgtt
- - - - - - - - - - - - - - - - tgcctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttg