1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttttaaaaactgatttttctgtatttattgattttatgatgcttgaagtgtttcaaatcccctttaagtttcttctttctgagttttcttagttttgcagGCTAGTCTTATTGAGCTTAAAAATATTATCATTGATGCTAAATCTGGTGTGAGTGGAGCAG
species | Glycine max |
transcript | GLYMA20G01220.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGGTTGTTATCCAACTTCTGTTCAACTTCCTCTTGTCCCATTGATAAAG GCTAGTCTTATTGAGCTTAAAAATATTATCATTGATGCTAAATCTGGTGTGEST: gi|26045728|gb|CA783226.1|CA783226
genomic: CTGGTTGTTATCCAACTTCTGTTCAACTTCCTCTTGTCCCATTGATAAAGgtcagcatgc ... agttttgcagGCTAGTCTTATTGAGCTTAAAAATATTATCATTGATGCTAAATCTGGTGTG
EST: CTGGTTGTTATCCAACTTCTGTTCAACTTCCTCTTGTCCCATTGATAAAG GCTAGTCTTATTGAGCTTAAAAATATTATCATTGATGCTAAATCTGGTGTGEST: gi|192326752|gb|FK017349.1|FK017349
genomic: CTGGTTGTTATCCAACTTCTGTTCAACTTCCTCTTGTCCCATTGATAAAGgtcagcatgc ... agttttgcagGCTAGTCTTATTGAGCTTAAAAATATTATCATTGATGCTAAATCTGGTGTG
EST: CTGGTTGTTATCCAACTTCTGTTCAACTTCCTCTTGTCCCATTGATAAAC GCTAGTCTTATTGAGCTTAAAA-TATTATCATTGATGCTAAAT
genomic: CTGGTTGTTATCCAACTTCTGTTCAACTTCCTCTTGTCCCATTGATAAAGgtcagcatgc ... agttttgcagGCTAGTCTTATTGAGCTTAAAAATATTATCATTGATGCTAAAT
aagtgtttcaaatcccctttaagtttcttctttctgagttttcttagttttgcagGCTAGTCTTATTGAGCTTAAAAATATTATCATTGATGCTAAATCTGGTGTGAGTGGAGCAG
ttttctta CT-rich tract
tttaagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttaaaaactgatttttctgtatttattgattttatgatgcttgaagtgtttcaaatcccctttaagtttcttctttctgagttttcttagttttgcagGCTAGTCTTATTGAGCTTAAAAATATTATCATTGATGCTAAATCTGGTGTGAGTGGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- -taaaaac
- - - - - - - - ttctgta
- - - - - - - - - - - - - - - - - - tgatgct
- - - - - - - - - - - - - - - - - - - - - -tgaagtg