Sequence
atgc intronic sequence ATGC exonic sequencegtaagttgtttaattttaaagagcaagatgatcattaacgagtggaagttcgtttgattagtaaagctcaattaatcaattgatttttccccctatattaattgtgaataatgcagATCCCTTATATTGGCCAACATTTGTTGTTGCTGTTGCTGCTGCCATTATAGCTAGCCAGGCAATGATTTCGGGAGCATTCTCTATTATATCTCAGGCCCT
Basic information
species | Glycine max |
transcript | GLYMA19G45260.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G45260.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os01g70490.1 (Oryza sativa), 3'ss of exon 7
gtaagttgtttaattttaaagagcaagatgatcattaacgagtggaagttcgtttgattagtaaagctcaattaatcaattgatttttccccctatattaattgtgaataatg-cagATCCCTTATATTGGCCAACATTTGTTGTTGCTGTTGCTGCTGCCATTATAGCTAGCCAGGCAATGATTTCGGGAGCATTCTCTATTATATCTCAGGCCCT---------------------------------
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--------------------gtacaa-acaataactaaagacagcaaacaaatgccatgattt--gcacatttgaaatattagaactaacaaaga-actcattggcattgttatcagacccattatattggccaacatttgtggtggcagTCGCAGCTGCCATAATTGCAAGCCAGGCTATGATATCTGGTGCATTCGCAATCATTGCTCAGTCCCAAATTCTAGGTTGTTTTCCACGAGTTCGTGTGAT
upper sequence: GLYMA19G45260.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv01s0011g03020.t01 (Vitis vinifera), 3'ss of exon 7
gtaagttgtttaattttaaagagcaagatgatcattaacgagtggaagttcgtttgattagtaaagctcaattaatcaattgatttttccccctatattaattgtgaataatgcagATCCCTTATATTGGCCAACATTTGTTGTTGCTGTTGCTGCTGCCATTATAGCTAGCCAGGCAATGATTTCGGGAGCATTCTCTATTATATCTCAGGCCCT
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----------------------gtaaaactcttagcaggctgcagaaggg-gatcaattgacgt--ctcaaagagttccttgttttgactaacacttctatatatgg-----gcagATCCTTTGTATTGGCCAACGTTTGTCGTGGCCGTTGCTGCTGCCATTATTGCTAGCCAAGCTATGATATCAGGAGCATTTGCAATTATCTCGCAGTCCCTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|308098179|gb|HO761350.1|HO761350EST: ACGGAAGTTCCCTGAGAAAGTGGCCAATACTTTCTATGATAGTATACCGG ATCCCTTATATTGGCCAACATTTGTTGTTGCTGTTGCTGCTGCCATTATAG
genomic: ACGGAAGTTCCCTGAGAAAGTGGCCAATACTTTCTATGATAGTATACCGGgtaagttgtt ... aataatgcagATCCCTTATATTGGCCAACATTTGTTGTTGCTGTTGCTGCTGCCATTATAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taaagctcaattaatcaattgatttttccccctatattaattgtgaataatgcagATCCCTTATATTGGCCAACATTTGTTGTTGCTGTTGCTGCTGCCATTATAGCTAGCCAGGCAATGATTTCGGGAGCATTCTCTATTATATCTCAGGCCCT
tattaat putative branch site (score: 2)
tcaattaatcaattga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagttgtttaattttaaagagcaagatgatcattaacgagtggaagttcgtttgattagtaaagctcaattaatcaattgatttttccccctatattaattgtgaataatgcagATCCCTTATATTGGCCAACATTTGTTGTTGCTGTTGCTGCTGCCATTATAGCTAGCCAGGCAATGATTTCGGGAGCATTCTCTATTATATCTCAGGCCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA