1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atgttagttaaattggtggaacgtggaacaacttccttcctcttcctttatagtaatttgcttgatggaataatggtagctgcttttatccttcttgaagTATGGTGATGGACCACAGTGCTCCTGTTATTCCACCAAATAGTGCGATGTCATCCTTGTCAGAAATGCCAGTGAGTCCGACATCAGTAGCATCCAATGGT
species | Glycine max |
transcript | GLYMA19G44420.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGGGTCCTGGCATCAAGCAACTCCCATCCCATTAGAATTTCCGGGAATGG TATGGTGATGGACCACAGTGCTCCTGTTATTCCACCAAATAGTGCGATGTC
genomic: GGAGTCCTGGCATCAAGCAACTCCCATCCCATTAGAATTTCCGGGAATGGgtgagaactt ... cttcttgaagTATGGTGATGGACCACAGTGCTCCTGTTATTCCACCAAATAGTGCGATGTC
ctttatagtaatttgcttgatggaataatggtagctgcttttatccttcttgaagTATGGTGATGGACCACAGTGCTCCTGTTATTCCACCAAATAGTGCGATGTCATCCTTGTCAGAAATGCCAGTGAGTCCGACATCAGTAGCATCCAATGGT
gcttgat putative branch site (score: 5)
ctgcttttatccttct putative PPT
tagtaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttagttaaattggtggaacgtggaacaacttccttcctcttcctttatagtaatttgcttgatggaataatggtagctgcttttatccttcttgaagTATGGTGATGGACCACAGTGCTCCTGTTATTCCACCAAATAGTGCGATGTCATCCTTGTCAGAAATGCCAGTGAGTCCGACATCAGTAGCATCCAATGGT
- - - - - - -tggtgga
- - - - - - - - - - - - -gaacaac
- - - - - - - - - - - - - - - - -tccttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tagctgc