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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgagaactttggcttttgttgtaattttctttttctttttaaatctttaccctgtgtggacgtcttcgtgctttatttatgaattatctttctatgcagATCTAGGAGCTCTAGGAAACTATCCTGGTTCACCATTTATGCAGTCTGATTCAGATATTTTGCTTGAATCATCGGATCAAAAGGACATAG

Basic information

species Glycine max
transcript GLYMA19G44420.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G44420.1 (Glycine max), 3'ss of exon 7
lower sequence: AT2G46420.1 (Arabidopsis thaliana), 3'ss of exon 7
------------------------ttgagaactttggcttttgttgtaattttctttttctttttaaatctttaccctgt--gtggacgtcttcgtgctttatttatgaattatcttt--ctatgcagATCTAGGAGCTCTAGGAAACTATCCTGGTTCACCATTTATGCAGTCTGATTCAGATATTTTGCTTGAATCATCGGATCAAAAGGACATAG
                        ||| ||  ||| |||          | |    |   ||  || ||  |     |    ||| ||  | | |    ||   ||| ||| ||||||  || ||||||| |||| ||| ||||||||||||| ||||| || ||| |||  ||||||||||| ||||| ||||| ||  | || ||| |||||||||
gtaagctctttttatcaaatgccattgcgag-tttagctcgaaaaactttataacatacgttggtagatgctccatgtacaggtgtactccatagaatgttgcatatcaatgatcttttactttgcagATTTAGGGGCTTTAGGAAACTATCCCGGTTCTCCTTTTCTGCCATCTGATTCAGAGATTTTACTTGACTCTCCCGAACAAGAGGACATAG

upper sequence: GLYMA19G44420.1 (Glycine max), 3'ss of exon 7
lower sequence: AT2G46420.2 (Arabidopsis thaliana), 3'ss of exon 7
------------------------ttgagaactttggcttttgttgtaattttctttttctttttaaatctttaccctgt--gtggacgtcttcgtgctttatttatgaattatcttt--ctatgcagATCTAGGAGCTCTAGGAAACTATCCTGGTTCACCATTTATGCAGTCTGATTCAGATATTTTGCTTGAATCATCGGATCAAAAGGACATAG----------
                        ||| ||  ||| |||          | |    |   ||  || ||  |     |    ||| ||  | | |    ||   ||| ||| ||||||  || ||||||| |||| ||| ||||||||||||| ||||| || ||| |||  ||||||||||| ||||| ||||| ||  | || ||| |||||||||          
gtaagctctttttatcaaatgccattgcgag-tttagctcgaaaaactttataacatacgttggtagatgctccatgtacaggtgtactccatagaatgttgcatatcaatgatcttttactttgcagATTTAGGGGCTTTAGGAAACTATCCCGGTTCTCCTTTTCTGCCATCTGATTCAGAGATTTTACTTGACTCTCCCGAACAAGAGGACATAGGTAAACATTA

upper sequence: GLYMA19G44420.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv15s0046g00990.t01 (Vitis vinifera), 3'ss of exon 7
ttgagaactttggcttttgttgtaattttctttttcttt---ttaaatctttaccctgtgtggacgtcttcgtgctttatttatgaattatct--ttctatgcagATCTAGGAGCTCTAGGAAACTATCCTGGTTCACCATTTATGCAGTCTGATTCAGATATTTTGCTTGAATCATCGGATCAAAAGGACATAG
 ||||||    ||  | || | ||    |  |  |   |   |||  |  | | ||  | ||  |  | || || |||  | ||   |  |    |  | |||||||||||||||| | |||||||| || ||||| || ||| ||   ||||||||||| ||||||||||| ||  |||| ||| |||| ||||
-tgagaa----ggtatatggtatatcactgctgctgcatggattattttgtaatccattatgagcaacctcatgttttgataatttgtggtgaaatcgtttgcagATCTAGGAGCTTTGGGAAACTACCCCGGTTCTCCCTTTCTGGGTTCTGATTCAGACATTTTGCTTGATTCTCCGGAGCAAGAGGATATAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120531303|gb|EH259436.1|EH259436
EST:     GTGGAATTTTAGTCTATCTGACTTAACAGCAGATTTGTCAAACTTGGGAG                         ATCTAGGAGCTCTAGGAAACTATCCTGGTTCACCATTTATGCAGTCTGATT
genomic: GTGGAATTTTAGTCTATCTGACTTAACAGCAGATTTGTCAAACTTGGGAGgtaaattcgt ... ttctatgcagATCTAGGAGCTCTAGGAAACTATCCTGGTTCACCATTTATGCAGTCTGATT
EST: gi|151400669|gb|EV270483.1|EV270483
EST:     GTGGAATTTTAGTCTATCTGACTTAACAGCAGATTTGTCAAACTTGGGAG                         ATCTAGGAGCTCTAGGAAACTATCCTGGTTCACCATTTATGCAGTCTGATT
genomic: GTGGAATTTTAGTCTATCTGACTTAACAGCAGATTTGTCAAACTTGGGAGgtaaattcgt ... ttctatgcagATCTAGGAGCTCTAGGAAACTATCCTGGTTCACCATTTATGCAGTCTGATT
EST: gi|208288823|gb|GE086628.1|GE086628
EST:     GTGGAATTTTAGTCTATCTGACTTAACAGCAGATTTGTCAAACTCGGGAG                         ATCTAGGAGCTCTAGGAAACTATCCTGGTTCACCATTTATGCAGTCTGATT
genomic: GTGGAATTTTAGTCTATCTGACTTAACAGCAGATTTGTCAAACTTGGGAGgtaaattcgt ... ttctatgcagATCTAGGAGCTCTAGGAAACTATCCTGGTTCACCATTTATGCAGTCTGATT
EST: gi|208277120|gb|GE080791.1|GE080791
EST:     GTGGAATTTTAGTCTATCTGACTTAACAGCAGATTTGTCAAACTTGGGAG                         ATCTAGGAGCTCTAGGAAACTATCCTGGTTCACCATTTATGCAGTCTGATT
genomic: GTGGAATTTTAGTCTATCTGACTTAACAGCAGATTTGTCAAACTTGGGAGgtaaattcgt ... ttctatgcagATCTAGGAGCTCTAGGAAACTATCCTGGTTCACCATTTATGCAGTCTGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttaccctgtgtggacgtcttcgtgctttatttatgaattatctttctatgcagATCTAGGAGCTCTAGGAAACTATCCTGGTTCACCATTTATGCAGTCTGATTCAGATATTTTGCTTGAATCATCGGATCAAAAGGACATAG
                                       ttatctttct  CT-rich tract
                           tttatttatgaattat  TA-rich tract