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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcctgccacctttggtcttaccatttgatgttaccagatagtatttatctagctttgaaattttttaaacttctgtgcagGATAGTCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGTGATCATGTACTTATTGG

Basic information

species Glycine max
transcript GLYMA19G42790.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G42790.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv14s0030g00540.t01 (Vitis vinifera), 3'ss of exon 5
------gtaagcctgccacctttgg------tcttaccatttgatg---ttacc--agatagtatttatctagctttgaaattttttaaacttctgtgcagGATAGTCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGTGATCATGTACTTATTGG
        ||  |  |    |||||      |   |    ||| ||    ||||  ||     |  |  |||   ||    ||| | |   | || |||||||||  |||||||| |||||||| |||||||||||||| || ||  |||||||||| |||||
tgggtgtcaaatccacattttttggaaccaattcgatgtcttggtgggtctaccccagccgacaggttactaaactttctgtttctcat-ttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATTGG

upper sequence: GLYMA19G42790.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv14s0030g00600.t01 (Vitis vinifera), 3'ss of exon 5
------gtaagcctgccacctttggtcttaccatttgatgttaccagatagtatttatctagctttgaaattttttaaacttctgt--------------gcagGATAGTCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGTGATCATGTACTTATTGG
        ||  |  |    |||||    |  |||||||||  |  | | | | |   | ||| |  |  ||  | ||  ||||||              ||||||||  |||||||| |||||||| |||||||||||||| || ||  |||||||||| || ||
tgggtgtcaaatccacattttttggaacca--atttgatgt--cttggtgggactaccccagcctacaggttactaaactttctgtttctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATCGG

upper sequence: GLYMA19G42790.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv14s0030g00550.t01 (Vitis vinifera), 3'ss of exon 4
------gtaagcctgccacctttggtcttaccatttgatgtt---accagatagtatttatcta---gctttgaaatttttta------aacttctgtgcagGATAGTCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGTGATCATGTACTTATTGG
        ||  |  |    |||||    |  ||| |||||        || |        |||   | |   ||| ||| |       |  | || |||||||||  |||||||| |||||||| |||||||||||||  || ||  |||||||||| || ||
tgggtgtcaaatccacattttttggaacca--attcgatgtcttggtgggacaaccccagcctacaggttactaaactttctgtttctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTACTGATCGG

upper sequence: GLYMA19G42790.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv14s0030g00570.t01 (Vitis vinifera), 3'ss of exon 8
------gtaagcctgccacctttggtcttaccatttgatgttaccagatagtatttatctagctttgaaattttttaaacttctgt--------------gcagGATAGTCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGTGATCATGTACTTATTGG
        ||  |  |    |||||    |  ||| |||||  |  | | | | |   | ||| |  |  ||  | ||  ||||||              ||||||||  |||||||| |||||||| |||||||||||||  || ||  ||||||| || || ||
tgggtgtcaaatccacattttttggaacca--attcgatgt--cttggtgggactaccccagcctacaggttactaaactttctgtttctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTGCTGATCGG

upper sequence: GLYMA19G42790.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv14s0030g00500.t01 (Vitis vinifera), 3'ss of exon 7
------gtaagcctgccacctttgg------tcttaccatttgatg---ttacca--gatagtatttatctagctttgaaattttttaaacttctgtgcagGATAGTCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGTGATCATGTACTTATTGG
        ||  |  |    |||||      |   |    ||| ||    ||||   |     |  |  |||   ||    ||| | |   | || |||||||||  |||||||| |||||||| |||||||||||||| || ||  |||||||||| |||||
tgggtgtcaaatccacattttttggaaccaattcgatgtcttggtgggtctacccccgccgacaggttactaaactttctgtttctcat-ttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATTGG

upper sequence: GLYMA19G42790.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv12s0121g00080.t01 (Vitis vinifera), 3'ss of exon 7
------gtaagcctgccacctttggtcttaccatttgatgttaccagatagtatttatctagctttgaaattttttaaacttctgt--------------gcagGATAGTCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGTGATCATGTACTTATTGG
        ||  |  |    |||||    |  ||| |||||  |  | | | | |   | ||| |  |  ||  | ||  ||||||              ||||||||  |||||||| |||||||| |||||||||||||  || ||  |||||||||| || ||
tgggtgtcaaatccacattttttggaacca--attcgatgt--cttggtgggactaccccagcctacaggttactaaactttctgtttctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTACTGATCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatgttaccagatagtatttatctagctttgaaattttttaaacttctgtgcagGATAGTCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGTGATCATGTACTTATTGG
 atttgat  putative branch site (score: 5)
                                            cttctgt  putative PPT
                tatttatctagctttg  TA-rich tract