1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagtatcatgcacaggtactagatgtcatatataattcagggaagatgaggtaaaatctaatttctgttatttgcttctttctaaattactagTCAGAGGAAACAGTTGCTAATGTGATGAAGAGACCATATTATATGGATGCAACAAGGGCTAAGGAATTTGGGGTCATTGATAGA
species | Glycine max |
transcript | GLYMA19G42180.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AACACACGGGAAAT TCAGAGGAAACAGTTGCTAATGTGATGAAGAGACCATATTATATGGATGCAEST: gi|208288911|gb|GE085344.1|GE085344
genomic: AACACACGGGAAATgtgagtatca ... aaattactagTCAGAGGAAACAGTTGCTAATGTGATGAAGAGACCATATTATATGGATGCA
EST: ATTAACAGGGACAATCTGGTTAAACTACTGGCCAAACAACAACGGGAAAT TCAGAGGAAACAGTTGCTAATGTGATGAAGAGACCATATTATATGGATGCEST: gi|8669208|gb|BE190315.1|BE190315
genomic: ATTAACAGGGACAATCTGGTTAAACTACTGGCCAAAC-AC-ACGGGAAATgtgagtatca ... aaattactagTCAGAGGAAACAGTTGCTAATGTGATGAAGAGACCATATTATATGGATGC
EST: TAATTAACAGGGACAATCTGGTTAAACTACTGGCCAAACACACGGGAAAT TCAGAGGAAACAGTTGCTAATGTGATGAAGAGACCATATTATATGGATGCA
genomic: TAATTAACAGGGACAATCTGGTTAAACTACTGGCCAAACACACGGGAAATgtgagtatca ... aaattactagTCAGAGGAAACAGTTGCTAATGTGATGAAGAGACCATATTATATGGATGCA
agggaagatgaggtaaaatctaatttctgttatttgcttctttctaaattactagTCAGAGGAAACAGTTGCTAATGTGATGAAGAGACCATATTATATGGATGCAACAAGGGCTAAGGAATTTGGGGTCATTGATAGA
ttctaaa putative branch site (score: 2)
tttgcttctttcta CT-rich tract
taaaatctaatttctg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatcatgcacaggtactagatgtcatatataattcagggaagatgaggtaaaatctaatttctgttatttgcttctttctaaattactagTCAGAGGAAACAGTTGCTAATGTGATGAAGAGACCATATTATATGGATGCAACAAGGGCTAAGGAATTTGGGGTCATTGATAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA