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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttcgagcctttacctatctcttgaaatgcaatagcaacttaactgaacaagtgactggaattgaatgatttctcttgcatttgggtgtatatgcttgggcaatttcttaaattctatattttcttaaaatgcagGCTAGGTAAGGATTTCCCGCTTAACAAGAATTCTGGTATTTTCCGTTGTGCGGTTTGCCAAATGGACCAACCCCCTGGTGATGGTTTATCAATGAACTCT

Basic information

species Glycine max
transcript GLYMA19G41810.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14012081|gb|BG727012.1|BG727012
EST:     GGGGTTGTGGAGGAGTTATTTTAAGAGGGTTCTGCAATGCTTACAGAAAG                         GCTAGGTAAGGATTTCCCGCTTAACAAGAATTCTGGTATTTTCCGTTGTGC
genomic: GGTGTTGTGGAGGAGTTATTTGAAGAGGGTTCTGCAATGCTTACAGAAAGgtgagtttcg ... taaaatgcagGCTAGGTAAGGATTTCCCGCTTAACAAGAATTCTGGTATTTTCCGTTGTGC
EST: gi|33390197|gb|CA853404.1|CA853404
EST:     GGTGTTGTGGAGGAGTTATTTGAAGAGGGTTCTGCAATGCTTACAGAAAG                         GCTAGGTAAGGATTTCCCGCTTAACAAGAATTCTGGTATTTTCCGTTGTGC
genomic: GGTGTTGTGGAGGAGTTATTTGAAGAGGGTTCTGCAATGCTTACAGAAAGgtgagtttcg ... taaaatgcagGCTAGGTAAGGATTTCCCGCTTAACAAGAATTCTGGTATTTTCCGTTGTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgggtgtatatgcttgggcaatttcttaaattctatattttcttaaaatgcagGCTAGGTAAGGATTTCCCGCTTAACAAGAATTCTGGTATTTTCCGTTGTGCGGTTTGCCAAATGGACCAACCCCCTGGTGATGGTTTATCAATGAACTCT
                                ttctatattttctt  CT-rich tract
                     aatttcttaaattcta  TA-rich tract