1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgttttatgtatgtgtgtttgtttttctgtattttctaccttcaaccattgctcttgaaactccagttgtctgggtggtttcaccttgtttgctcttgacctttgacagGTAAAAGGCGAACCAAATATATCGTACATATGCTCTAGATATTATAGAGCACCTGAGCTTATATTTGGAGCAACTGAATATACTACAGCTATTGACGTTT
species | Glycine max |
transcript | GLYMA19G41420.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CACATACTCACCAGGTCAAAATATGCGACTTTGGAAGTGCAAAAGTCTTG GTAAAAGGCGAACCAAATATATCGTACATATGCTCTAGATATTEST: gi|6963904|gb|AW432597.1|AW432597
genomic: CACATACTCACCAGGTCAAAATATGCGACTTTGGAAGTGCAAAAGTCTTGgtatgtttta ... cctttgacagGTAAAAGGCGAACCAAATATATCGTACATATGCTCTAGATATT
EST: CACATACTCACCAGGTCAAAATATGCGACTTTGGAAGTGCAAAAGTCTTG GTAAAAGGCGAACCAAATATATCGTACATATGCTCTAGATATTATAGAGCAEST: gi|15814589|gb|BI786864.1|BI786864
genomic: CACATACTCACCAGGTCAAAATATGCGACTTTGGAAGTGCAAAAGTCTTGgtatgtttta ... cctttgacagGTAAAAGGCGAACCAAATATATCGTACATATGCTCTAGATATTATAGAGCA
EST: CACATACTCACCAGGTCAAAATATGCGACTTTGGAAGTGCAAAAGTCTTG GTAAAAGGCGAACCAAATATATCGTACATATGCTCTAGATATTATAGAGCA
genomic: CACATACTCACCAGGTCAAAATATGCGACTTTGGAAGTGCAAAAGTCTTGgtatgtttta ... cctttgacagGTAAAAGGCGAACCAAATATATCGTACATATGCTCTAGATATTATAGAGCA
ttgaaactccagttgtctgggtggtttcaccttgtttgctcttgacctttgacagGTAAAAGGCGAACCAAATATATCGTACATATGCTCTAGATATTATAGAGCACCTGAGCTTATATTTGGAGCAACTGAATATACTACAGCTATTGACGTTT
tcttgac putative branch site (score: 3)
ccttt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttttatgtatgtgtgtttgtttttctgtattttctaccttcaaccattgctcttgaaactccagttgtctgggtggtttcaccttgtttgctcttgacctttgacagGTAAAAGGCGAACCAAATATATCGTACATATGCTCTAGATATTATAGAGCACCTGAGCTTATATTTGGAGCAACTGAATATACTACAGCTATTGACGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA