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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacctctttttcataatatattcttctctattcccattcccattcccaatgcattctttgttgaaagcggtttgacaactaataaatgtctcatttcagGTTCGTGTTATAATTGTCAAATTGGCAGATAGGTTGCATAACATGCGCACACTATCACATATGCCTCCACATAAACAG

Basic information

species Glycine max
transcript GLYMA19G40050.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G40050.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os03g22160.1 (Oryza sativa), 3'ss of exon 7
gtgacctctttttcataatatattcttctctattcccattcccattcccaatgcattctttgttgaaagcggtttgacaactaataaatgtctcatttcagGTTCGTGTTATAATTGTCAAATTGGCAGATAGGTTGCATAACATGCGCACACTATCACATATGCCTCCACATAAACAG
  |   | | |||  |  | |  || | |  | |   |||   ||    |     ||         |   ||||  |  |  | | ||      |||  |||||||||| || ||||| ||| ||||||| ||| ||||||| ||||| |||||  ||||||||||||  || || |||
--gttttttctttttttgtttcgtcatgtagactgttattt--atcgagagctatttgaacaccctactaggttccatgaaaatttaaataaaaattgtagGTTCGTGTAATCATTGTGAAACTGGCAGACAGGCTGCATAATATGCGTACACTCACACATATGCCTCAGCACAAGCAG

upper sequence: GLYMA19G40050.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G353147_T01 (Zea mays), 3'ss of exon 6
gtgacctctttttcataatatattcttctctattcccattcccattcccaatgcattctttgttgaaagcggtttgacaactaataaatgtctcatttcagGTTCGTGTTATAATTGTCAAATTGGCAGATAGGTTGCATAACATGCGCACACTATCACATATGCCTCCACATAAACAG
||  ||| ||| || | ||||         |||    |     |      || ||  || |||         ||    ||  ||| ||  ||   | | |||||||||| || ||||||||| ||||||| |||||||||||||||||||| ||  ||||||||||||  || || |||
gtatcctttttatc-tcatatggaacatcttatcaggagaaaaaa----gattcaa-ctctgtacgttttacttaataaaaaaattaaaatcaattcttagGTTCGTGTGATTATTGTCAAACTGGCAGACAGGTTGCATAACATGCGCACTCTCACACATATGCCTCAGCACAAGCAG

upper sequence: GLYMA19G40050.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv07s0005g00770.t01 (Vitis vinifera), 3'ss of exon 7
gtgacctctttttcataatatattcttctctattcccattcccattcccaatgcattctttgttgaaagcggtttgacaactaataaatgtctcatttcagGTTCGTGTTATAATTGTCAAATTGGCAGATAGGTTGCATAACATGCGCACACTATCACATATGCCTCCACATAAACAG
               |||| ||||| | | |||    ||| ||||   |||||| |   || |     |    | | || |||| | | ||     ||||||| || ||||||||||||||| | || || || || ||||| |||||||| || || || |||||||||||||| |||
--------------gtaatgtattcat-tatat----atttccat---caatgcctgtcttat-----gtatgtgggcagctaa-acaagtgctgcttcagGTCCGCGTTATAATTGTCAAACTAGCCGACAGATTACATAATATGCGCACTCTTTCTCACATGCCTCCACATAAGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccaatgcattctttgttgaaagcggtttgacaactaataaatgtctcatttcagGTTCGTGTTATAATTGTCAAATTGGCAGATAGGTTGCATAACATGCGCACACTATCACATATGCCTCCACATAAACAG
                                aactaat  putative branch site (score: 2)
                                            tctcatttc  putative PPT
                                aactaataaat  TA-rich tract