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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaattatatcgacatgtatttgttggatgttttgaatcgttaaaattatgctgagtgtttcgaatcttgagtgtcattcaatctactcttttctttgtagCTTTCTGGGAGCTATGATTCAAAGTTTGGTGGTTTTGGATCTGCACCAAAGTTTCCCAGACCAGTTGAGATAAACTTGATGCTATATCACTCCAAAAAGT

Basic information

species Glycine max
transcript GLYMA19G39560.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G39560.1 (Glycine max), 3'ss of exon 7
lower sequence: AT4G03200.1 (Arabidopsis thaliana), 3'ss of exon 7
aaattatatcgacatgtatttgttggatgttttgaatcgttaaaattatgctgagtgtttcgaatcttgagtgtcattcaat--ctactcttttctttgtagCTTTCTGGGAGCTATGATTCAAAGTTTGGTGGTTTTGGATCTGCACCAAAGTTTCCCAGACCAGTTGAGATAAACTTGATGCTATATCACTCCAAAAAGT
             ||| ||| |      |   |  |     | |  |||| |   |   || |      |  ||| |  ||     | | |||   ||  |||||||| |||||||||||||  | || ||||| |||||||||||||||||||| || || || || |||||  |  ||||||| ||||| | ||||||||
-----------gtatg-attcgactcgcggactctagaaaaatatatatgattgatacatcaacatgaaaaggtcttctaacagtgagtgtttgtgttaaagCTTTCTCGGAGCTATGATTCGGAATTCGGTGGGTTTGGATCTGCACCAAAGTTCCCGAGGCCTGTCGAGATCCAGCTGATGCTTTATCATTACAAAAAGT

upper sequence: GLYMA19G39560.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv07s0104g01480.t01 (Vitis vinifera), 3'ss of exon 7
------aaattatatcgacatgtatttgttggatgttttgaatcgttaaaattatgctgagtgtttcgaatcttgagtgtcattcaatctactcttttctttgtagCTTTCTGGGAGCTATGATTCAAAGTTTGGTGGTTTTGGATCTGCACCAAAGTTTCCCAGACCAGTTGAGATAAACTTGATGCTATATCACTCCAAAAAGT
      |     |  ||       |||  | |||  ||||  | |||||   | | |  | | |      |||| | |||| ||     |    |||   || |||||  |||||| ||||||| |  ||| |||||| ||||||||||||||||||||||| || |||||||||||  |  | ||||| ||||| |  |||||||
gttgtcatggacttccgtttcactttttgttgataatttgg-ttgttaatgctttccgtaatttccatcttcttaattgtcctt-----tttcatttctcttatagCTGGCTGGGAACTATGATCCTGAGTATGGTGGGTTTGGATCTGCACCAAAGTTTCCTAGGCCAGTTGAGATTCAACTAATGCTTTATCATTATAAAAAGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgctgagtgtttcgaatcttgagtgtcattcaatctactcttttctttgtagCTTTCTGGGAGCTATGATTCAAAGTTTGGTGGTTTTGGATCTGCACCAAAGTTTCCCAGACCAGTTGAGATAAACTTGATGCTATATCACTCCAAAAAGT
                                    tctactcttttctttg  CT-rich tract
                                           ttttcttt  TA-rich tract