1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aaatatgatttgctttatcttttttatccaatgcttgctttatttaaatgcctctcttcttgttaaattgttgtcttctaatggaattttcctgtgccagGAGGATCAATTCATTGACATGATGTTCCAGGCATTACTGAAGGTGAGTCATTCATGAGTAATCAAACACTGAAGGTTGGATGGAAACTGCATATAAAGTT
species | Glycine max |
transcript | GLYMA19G38280.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGTATTCAGCAGGGATAATGTCCGTGATGCACTTTTATCATTGGTTCAG GAGGATCAATTCATTGACATGATGTTCCAGGCATTAEST: gi|58022923|gb|CX709664.1|CX709664
genomic: CTGTATTCAGCAGGGATAATGTCCGTGATGCACTTTTATCATTGGTTCAGgtatttcatg ... cctgtgccagGAGGATCAATTCATTGACATGATGTTCCAGGCATTA
EST: CTGTATTCAGCAGGGATAATGTCCGTGATGCACTTTTATCATTGGTTCAG GAGGATCAATTCATTGACATGATGTTCCAGGCATTACTGAAGGTGAGTCATEST: gi|193530688|gb|FK484941.1|FK484941
genomic: CTGTATTCAGCAGGGATAATGTCCGTGATGCACTTTTATCATTGGTTCAGgtatttcatg ... cctgtgccagGAGGATCAATTCATTGACATGATGTTCCAGGCATTACTGAAGGTGAGTCAT
EST: CTGTATTCAGCAGGGATAATGTCCGTGATGCACTTTTATCATTGGTTCAG GAGGATCAATTCATTGACATGATGTTCCAGGCATTACTGAAGGTGAGTCATEST: gi|22524807|gb|BU083618.1|BU083618
genomic: CTGTATTCAGCAGGGATAATGTCCGTGATGCACTTTTATCATTGGTTCAGgtatttcatg ... cctgtgccagGAGGATCAATTCATTGACATGATGTTCCAGGCATTACTGAAGGTGAGTCAT
EST: CTGTATTCAGCAGGGATAATGTCCGTGATGCACTTTTATCATTGGTTCAG GAGGATCAATTCATTGACATGATGTTCCAGGCATTACTGAAGGTGAGTCATEST: gi|7685300|gb|AW755948.1|AW755948
genomic: CTGTATTCAGCAGGGATAATGTCCGTGATGCACTTTTATCATTGGTTCAGgtatttcatg ... cctgtgccagGAGGATCAATTCATTGACATGATGTTCCAGGCATTACTGAAGGTGAGTCAT
EST: CTGTATTCAGCAGGGATAATGTCCGTGATGCACTTTTATCATTGGTTCAG GAGGATCAATTCATTGACATGATGTTCCAGGCATTACTGAAGGTGAGTCATEST: gi|22524869|gb|BU083680.1|BU083680
genomic: CTGTATTCAGCAGGGATAATGTCCGTGATGCACTTTTATCATTGGTTCAGgtatttcatg ... cctgtgccagGAGGATCAATTCATTGACATGATGTTCCAGGCATTACTGAAGGTGAGTCAT
EST: CTGTATTCAGCAGGGATAATGTCCGTGATGCACTTTTATCATTGGTTCAG GAGGATCAATTCATTGACATGATGTTCCAGGCATTACTGAAGGTGAGTCATEST: gi|58016446|gb|CX703188.1|CX703188
genomic: CTGTATTCAGCAGGGATAATGTCCGTGATGCACTTTTATCATTGGTTCAGgtatttcatg ... cctgtgccagGAGGATCAATTCATTGACATGATGTTCCAGGCATTACTGAAGGTGAGTCAT
EST: CTGTATTCAGCAGGGATAATGTCCGTGATGCACTTTTATCATTGGTTCAG GAGGATCAATTCATTGACATGATGTTCCAGGCATTACTGAAGGTGAGTCAT
genomic: CTGTATTCAGCAGGGATAATGTCCGTGATGCACTTTTATCATTGGTTCAGgtatttcatg ... cctgtgccagGAGGATCAATTCATTGACATGATGTTCCAGGCATTACTGAAGGTGAGTCAT
aaatgcctctcttcttgttaaattgttgtcttctaatggaattttcctgtgccagGAGGATCAATTCATTGACATGATGTTCCAGGCATTACTGAAGGTGAGTCATTCATGAGTAATCAAACACTGAAGGTTGGATGGAAACTGCATATAAAGTT
ttctaat putative branch site (score: 2)
ttttcctgt putative PPT
ttgttaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatatgatttgctttatcttttttatccaatgcttgctttatttaaatgcctctcttcttgttaaattgttgtcttctaatggaattttcctgtgccagGAGGATCAATTCATTGACATGATGTTCCAGGCATTACTGAAGGTGAGTCATTCATGAGTAATCAAACACTGAAGGTTGGATGGAAACTGCATATAAAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - -tgatttg
- - - - - - - - - - - - - - - - gcttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaatgg