1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttagaatcttaatgcaatcttggggttaaaggaaggtattcccgttaatccctttcttcttcaaacgtcacttactcttttattttcttgcagTATAATCCACCATTTACTCTTCCATTTCAACGCCGTAATGAAATTGCATTGGAGGTGGAATGGAAAAATAAATAGGAATAATATTAGCTAGTTTACAATC
species | Glycine max |
transcript | GLYMA19G38010.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTGACAGTCAATTTGAAATTAAAGAGGGAACTTCAGTAGAAGTTGCACAG TATAATCCACCATTTACTCTTCCATTTCAACGCCGTAATGAAATTGCATTGEST: gi|51341683|gb|CO983000.1|CO983000
genomic: GTGACAGTCAATTTGAAATTAAAGAGGGAACTTCAGTAGAAGTTGCACAGgttagaatct ... tttcttgcagTATAATCCACCATTTACTCTTCCATTTCAACGCCGTAATGAAATTGCATTG
EST: GTGACAGTCAATTTGAAATTAAAGAGGGAACTTCAGTAGAAGTTGCACAG TATAATCCACCATTTACTCTTCCATTTCAACGCCGTAATGAAATTGCATTG
genomic: GTGACAGTCAATTTGAAATTAAAGAGGGAACTTCAGTAGAAGTTGCACAGgttagaatct ... tttcttgcagTATAATCCACCATTTACTCTTCCATTTCAACGCCGTAATGAAATTGCATTG
ttcccgttaatccctttcttcttcaaacgtcacttactcttttattttcttgcagTATAATCCACCATTTACTCTTCCATTTCAACGCCGTAATGAAATTGCATTGGAGGTGGAATGGAAAAATAAATAGGAATAATATTAGCTAGTTTACAATC
cacttac putative branch site (score: 2)
tcacttactcttttat CT-rich tract
ttactcttttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagaatcttaatgcaatcttggggttaaaggaaggtattcccgttaatccctttcttcttcaaacgtcacttactcttttattttcttgcagTATAATCCACCATTTACTCTTCCATTTCAACGCCGTAATGAAATTGCATTGGAGGTGGAATGGAAAAATAAATAGGAATAATATTAGCTAGTTTACAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA