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...caccgtatttaatgaattactagcattacatgcttcctttggcatgatatgcaactggtatcaatagtcattaattaaatttggtctgttatattttcagGTTCTTTTGGAACTGTACATCACGCAGAGTGGAATGGCTCG
species | Glycine max |
transcript | GLYMA19G37570.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTGGACATATCGTGGACTGATCTTGTTTTGAAAGGGAGAATTGGATCAG GTTCTTTTGGAACTGTACATCACGCAGAGTGGAATGGCTACGEST: gi|208030492|gb|GD828404.1|GD828404
genomic: TTTGGACATATCGTGGACTGATCTTGTTTTGAAAGGGAGAATTGGATCAGgtatttatgc ... atattttcagGTTCTTTTGGAACTGTACATCACGCAGAGTGGAATGGCT-CG
EST: TTTGGACATATCGTGGACTGATCTTGTTTTGAAAGGGAGAATTGGATCAG GTTCTTTTGGAACTGTACATCACGCAGAGTGGAATGGCTCGEST: gi|207761700|gb|GD734631.1|GD734631
genomic: TTTGGACATATCGTGGACTGATCTTGTTTTGAAAGGGAGAATTGGATCAGgtatttatgc ... atattttcagGTTCTTTTGGAACTGTACATCACGCAGAGTGGAATGGCTCG
EST: TTTGGACATATCGTGGACTGATCTTGTTTTGAAAGGGAGAATTGGATCTG GTTCTTTTGGAACTGTACATCACGCAGAGTGGAATGGCTCGEST: gi|193731488|gb|FK663634.1|FK663634
genomic: TTTGGACATATCGTGGACTGATCTTGTTTTGAAAGGGAGAATTGGATCAGgtatttatgc ... atattttcagGTTCTTTTGGAACTGTACATCACGCAGAGTGGAATGGCTCG
EST: TTTGGACATATCGTGGACTGATCTTGTTTTGAAAGGGAGAATTGGATCAG GTTCTTTTGGAACTGTACATCACGCAGAGTGGAATGGCTCGEST: gi|208324413|gb|GE125714.1|GE125714
genomic: TTTGGACATATCGTGGACTGATCTTGTTTTGAAAGGGAGAATTGGATCAGgtatttatgc ... atattttcagGTTCTTTTGGAACTGTACATCACGCAGAGTGGAATGGCTCG
EST: AATTGGATCAG GTTCTTTTGGAACTGTACATCACGCAGAGTGGAATGGCTCG
genomic: AATTGGATCAGgtatttatgc ... atattttcagGTTCTTTTGGAACTGTACATCACGCAGAGTGGAATGGCTCG
gatatgcaactggtatcaatagtcattaattaaatttggtctgttatattttcagGTTCTTTTGGAACTGTACATCACGCAGAGTGGAATGGCTCG
cattaat putative branch site (score: 3)
tattttc putative PPT
attaattaaatttggt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caccgtatttaatgaattactagcattacatgcttcctttggcatgatatgcaactggtatcaatagtcattaattaaatttggtctgttatattttcagGTTCTTTTGGAACTGTACATCACGCAGAGTGGAATGGCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA