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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactgcttgatttctccttgtccctgtccttttatcaattagttcacattttcaaaactaacttttcgggatataatgcttctagATTCCATTCAAAATAGAGCAGCAAAGAAGAATTGCGTCAATGCTCAATACCTTGGTTTATAATGGCTTGTCCCATGTTAGTGGTCATCATAATAGGCCTC

Basic information

species Glycine max
transcript GLYMA19G37310.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37310.4 (Glycine max), 3'ss of exon 7
lower sequence: Vv08s0007g04290.t01 (Vitis vinifera), 3'ss of exon 5
gtaa-ctgcttgatttctccttgtccctgtccttttatcaattagttcacattttcaaaactaacttttcgggatataatgcttctagATTCCATTCAAAATAGAGCAGCAAAGAAGAATTGCGTCAATGCTCAATACCTTGGTTTATAATGGCTTGTCCCATGTTAGTGGT---CATCATAATAGGCCTC
||||  |  |||  || || ||  || |      || ||| || ||    |||||       ||| |||   |||   |||| | ||| ||||||||| | | ||||||||  |||||||||| ||||||||||||||  | || |||||||| |  | ||||| |||||||   || || ||||| |   
gtaaattagttgggttttctttcaccattgggaattgtca-ttggtatttatttt-------aacattt---gatgccatgcat-tagGTTCCATTCACACTGGAGCAGCAGCGAAGAATTGCATCAATGCTCAATACACTAGTGTATAATGGTTCATTCCATGGTAGTGGTGGCCAGCAGAATAGAC---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208081249|gb|GD880293.1|GD880293
EST:     ATTCTCACCTGCTTTTAGTTCTTGATGACATAGAGTTCTATGAGAAACAG                         ATTCCATTCAAAATAGAGCAGCAAAGAAGAATTGCGTCAATGCTCAATACC
genomic: ATTCTCACCTGCTTTTAGTTCTTGATGACATAGAGTTCTATGAGAAACAGgtaactgctt ... atgcttctagATTCCATTCAAAATAGAGCAGCAAAGAAGAATTGCGTCAATGCTCAATACC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatcaattagttcacattttcaaaactaacttttcgggatataatgcttctagATTCCATTCAAAATAGAGCAGCAAAGAAGAATTGCGTCAATGCTCAATACCTTGGTTTATAATGGCTTGTCCCATGTTAGTGGTCATCATAATAGGCCTC
                         aactaac  putative branch site (score: 1)
                                              tgcttct  putative PPT
                 attttcaaaactaa  TA-rich tract