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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgaaggaactaaatagccacatttattttatttggaaaaactagttgcgttttaatgagagttttaactttttatatatatgatgtctttctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGGAATTCAATAGCACAGGGAAATACTCACTCTGGTACTTATTTACCACAAG

Basic information

species Glycine max
transcript GLYMA19G37270.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193614594|gb|FK565138.1|FK565138
EST:     CCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: CCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|193321590|gb|FK284074.1|FK284074
EST:     AGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: AGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|193330910|gb|FK297186.1|FK297186
EST:     ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|208196397|gb|GD993110.1|GD993110
EST:     AATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: AATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|193721910|gb|FK662902.1|FK662902
EST:     ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAA
genomic: ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAA
EST: gi|193329405|gb|FK296559.1|FK296559
EST:     ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|208328312|gb|GE127510.1|GE127510
EST:     ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|207786754|gb|GD757971.1|GD757971
EST:     CTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: CTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|208086810|gb|GD883260.1|GD883260
EST:     ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|193434847|gb|FK402875.1|FK402875
EST:     ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|208245048|gb|GE037550.1|GE037550
EST:     ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|193632463|gb|FK584231.1|FK584231
EST:     ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|193316816|gb|FK281972.1|FK281972
EST:     TGGCTTTGTCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: TGGCTTTG-CACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|193310852|gb|FK274692.1|FK274692
EST:     CCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: CCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|208090439|gb|GD887462.1|GD887462
EST:     TTGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: -TGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|193685090|gb|FK626558.1|FK626558
EST:     ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|193345381|gb|FK312960.1|FK312960
EST:     ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         -TTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|193670215|gb|FK608671.1|FK608671
EST:     ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|193382187|gb|FK347568.1|FK347568
EST:     CCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: CCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|193519077|gb|FK475402.1|FK475402
EST:     ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|208203589|gb|GE000192.1|GE000192
EST:     GGTCTTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: GG-C-TTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|207681278|gb|GD663817.1|GD663817
EST:     ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|193439843|gb|FK408090.1|FK408090
EST:     ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|193427891|gb|FK395821.1|FK395821
EST:     ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|208086921|gb|GD883315.1|GD883315
EST:     TGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: TGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|208291693|gb|GE090267.1|GE090267
EST:     ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTG
genomic: ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTG
EST: gi|208182823|gb|GD984825.1|GD984825
EST:     TGGCTTTGCACCCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: TGGCTTTGCA-CCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|208024461|gb|GD826037.1|GD826037
EST:     TTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: TTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|193629906|gb|FK576026.1|FK576026
EST:     ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|193594789|gb|FK547208.1|FK547208
EST:     ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|208148922|gb|GD945456.1|GD945456
EST:     ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|208108070|gb|GD902050.1|GD902050
EST:     CCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: CCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|193520600|gb|FK475581.1|FK475581
EST:     ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|193614975|gb|FK560563.1|FK560563
EST:     ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: ATGGCTTTGCACCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
EST: gi|208066711|gb|GD866440.1|GD866440
EST:     TGGCTTTGCACCCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCA                         GTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG
genomic: TGGCTTTGCA-CCCCCTGCTAGATCATTTCAACAATCACCAGTTCCTGCAgtgagtgaca ... tctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcgttttaatgagagttttaactttttatatatatgatgtctttctttcacagGTTTCTAACAATACTAGGCAGCATAGGCAAAACAGGGGCAAGTTGAATGGGAATTCAATAGCACAGGGAAATACTCACTCTGGTACTTATTTACCACAAG
                 ttttaac  putative branch site (score: 2)
                                       tgtctttctttcac  putative PPT
     ttttaatgagagtttt  TA-rich tract