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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttttctttcactccatcattttaggattccactatataggtgcaaaatgttacatttgaaagggttcaaaagtccaaataaattgtcactaatcactgtttaattaatatatatatatatatatatatatcatagGGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTAACTGGGAAGTACTTTGTGGATTGCAATCAATGCAAACCAAGTTCACACG

Basic information

species Glycine max
transcript GLYMA19G35630.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G35630.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv08s0040g03400.t01 (Vitis vinifera), 3'ss of exon 7
gtatttttctttcactccatcattttaggattccactatataggtgcaaaatgttacatttgaaagggttcaaaagtccaaataaattgtcactaatcactgtttaattaatatatatatatatatatatatatcat-agGGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTAACTGGGAAGTACTTTGTGGATTGCAATCAATGCAAACCAAGTTCACACG
               |  |||||      ||  | | ||  | |  || | |    ||||||        ||||| ||  |  |    |||   |||  | ||   | | |  ||   | | |  || || | |  | ||||||||||||| ||||| || ||||| || ||||||||  |||||||||| | ||||||||||| | |||| |||||| |       || ||  || | |
--------------gtaaatcatccc---atctctcaatgaaagc-cagagt----catttg------cccaaaaatcacagcaggcagtcg--aatttcagtgggaatgacttaggaaaaaaattaaatttcttttcagGGAGCAGCCACCACATGTTACGTTGCGCTACACCCAAGTATGAAAGGTGTGAGTGGGAAGTACTATCTGGACTGCAATGAGATGGCCCCGAGCGCATATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10253286|gb|BE821052.1|BE821052
EST:     ATTTCTTAAAGGTCTTCACCTTTTACATATGGAAGAACGTCCCCCAG                         GGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
genomic: ATTTCTTAAAGGTCTTCACCTTTTACATATGGAAGAACGTCCCCCAGgtatttttct ... tatatcatagGGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
EST: gi|10232766|gb|BE801654.1|BE801654
EST:     ATTTCTTAAAGGTCTTCACCTTTTACATATGGAAGAACGTCCCCCAT                         GGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
genomic: ATTTCTTAAAGGTCTTCACCTTTTACATATGGAAGAACGTCCCCCAGgtatttttct ... tatatcatagGGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
EST: gi|31310906|gb|CD396109.1|CD396109
EST:     ATTTCTTAAAGGTCTTCACCTTTTACATATGGAAGAACGTCCCCCAG                         GGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
genomic: ATTTCTTAAAGGTCTTCACCTTTTACATATGGAAGAACGTCCCCCAGgtatttttct ... tatatcatagGGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
EST: gi|31465612|gb|CD407640.1|CD407640
EST:     ATTTCTTAAAGGTCTTCACCTTTTACATATGGAAGAACGTCCCCCAG                         GGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
genomic: ATTTCTTAAAGGTCTTCACCTTTTACATATGGAAGAACGTCCCCCAGgtatttttct ... tatatcatagGGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
EST: gi|31561130|gb|CD486968.1|CD486968
EST:     ATTTCTTAAAGGTCTTCACCTTTTACATATGGAAGAACGCCCCCCA-                         GGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
genomic: ATTTCTTAAAGGTCTTCACCTTTTACATATGGAAGAACGTCCCCCAGgtatttttct ... tatatcatagGGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
EST: gi|31474583|gb|CD416611.1|CD416611
EST:     ATTTCTTAAAGGTCTTCACCTTTTACATATGGAAGAACGTCCCCCAG                         GGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
genomic: ATTTCTTAAAGGTCTTCACCTTTTACATATGGAAGAACGTCCCCCAGgtatttttct ... tatatcatagGGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
EST: gi|151409303|gb|EV279111.1|EV279111
EST:     ATTTCTTAAAGGTCTTCACCTTTTACATATGGAAGAACGTCCCCCAG                         GGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
genomic: ATTTCTTAAAGGTCTTCACCTTTTACATATGGAAGAACGTCCCCCAGgtatttttct ... tatatcatagGGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
EST: gi|7234016|gb|AW569357.1|AW569357
EST:     ATTTCTTAGAGGTCTTCACCTTTTACATATGGAAGAACGTCCNCCAG                         GGAGCAGCCACGACATGCTATTGT-GCTCTCCACCCAAGCGTGAAAGGTGT
genomic: ATTTCTTAAAGGTCTTCACCTTTTACATATGGAAGAACGTCCCCCAGgtatttttct ... tatatcatagGGAGCAGCCACGACATGCTAT-GTTGCTCTCCACCCAAGCGTGAAAGGTGT
EST: gi|31459767|gb|CD401795.1|CD401795
EST:     ATTTCTTAAAGGTCTTCACCTTTTACATATGGAAGAACGTCCCCCAG                         GGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
genomic: ATTTCTTAAAGGTCTTCACCTTTTACATATGGAAGAACGTCCCCCAGgtatttttct ... tatatcatagGGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
EST: gi|12689278|gb|BG155614.1|BG155614
EST:     ATTTCTTAAAGGTCTTCACCTTTTACATATGGAAGAACGTCCCCCAG                         GGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
genomic: ATTTCTTAAAGGTCTTCACCTTTTACATATGGAAGAACGTCCCCCAGgtatttttct ... tatatcatagGGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattgtcactaatcactgtttaattaatatatatatatatatatatatatcatagGGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTAACTGGGAAGTACTTTGTGGATTGCAATCAATGCAAACCAAGTTCACACG
                tgtttaattaatatat  TA-rich tract