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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgctgatttcaacttccttttttgttaacttggatatgttgtaaaatttattctgctgttattcatggcttctattgtttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCAGACTGGATGCTCAACAAAAGAAGCTCAACCTTCCAATCCTTCCAACCA

Basic information

species Glycine max
transcript GLYMA19G29180.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8283431|gb|BE020992.1|BE020992
EST:     CTTCAAGGAAGTCCTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCCTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctg ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|13311463|gb|BG405114.1|BG405114
EST:     CTTCAAGGAAGTCCTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCCTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctg ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|6071898|gb|AW101285.1|AW101285
EST:     CTTCAAGGAAGTCCTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCCTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctg ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|10236584|gb|BE805472.1|BE805472
EST:     GAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: GAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctg ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|6566748|gb|AW234380.1|AW234380
EST:     CTTCAAGGAAGTCCTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACATATGTCAGTGCC
genomic: CTTCAAGGAAGTCCTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctg ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|8283740|gb|BE021299.1|BE021299
EST:     CTTCAAGGAAGTCCTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCCTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctg ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|6069807|gb|AW099413.1|AW099413
EST:     CTTCAAGGAAGTCCTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCCTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctg ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|213588272|gb|DB981084.1|DB981084
EST:     CTTCAAGGAAGTCCTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCCTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctg ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|16278622|gb|BI942999.1|BI942999
EST:     CCTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CCTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctg ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|16349493|gb|BI975088.1|BI975088
EST:     CTTCAAGGAAGTCCTCTCCTTTAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCCTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctg ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|16277874|gb|BI942608.1|BI942608
EST:     ACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: ACGAGGCTGTTCAGAAGGCTgtgagtgctg ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|15662108|gb|BI699479.1|BI699479
EST:     CTTCAAGGAAGTCCTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAAGCT                         GCTGCTGCATTGAAG
genomic: CTTCAAGGAAGTCCTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctg ... ttcctctcagGCTGCTGCATTGAAG
EST: gi|14990337|gb|BI316010.1|BI316010
EST:     CTTCAAGGAAGTCCTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCCTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctg ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|15288042|gb|BI471933.1|BI471933
EST:     CTTCAAGGAAGTCCTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCCTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctg ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|16278888|gb|BI943146.1|BI943146
EST:     ACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: ACGAGGCTGTTCAGAAGGCTgtgagtgctg ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
EST: gi|10237721|gb|BE806609.1|BE806609
EST:     TCCAAG-AAGTCCTCTCCAAGAGTGACCAACCGAG-CTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGT
genomic: TC-AAGGAAGTCCTCTCCAAGAGTGACCAAC-GAGGCTGTTCAGAAGGCTgtgagtgctg ... ttcctctcagGCTGCTGCATTGAAGGGT
EST: gi|15812912|gb|BI785178.1|BI785178
EST:     CTTCAAGGAAGTCCTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCT                         GCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC
genomic: CTTCAAGGAAGTCCTCTCCAAGAGTGACCAACGAGGCTGTTCAGAAGGCTgtgagtgctg ... ttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgttgtaaaatttattctgctgttattcatggcttctattgtttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCAGACTGGATGCTCAACAAAAGAAGCTCAACCTTCCAATCCTTCCAACCA
                                   cttctattgtttcctc  CT-rich tract
     ttgtaaaatttattct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtgctgatttcaacttccttttttgttaacttggatatgttgtaaaatttattctgctgttattcatggcttctattgtttcctctcagGCTGCTGCATTGAAGGGTTCAGATCATCGCCGTGCAACAAATGTCAGTGCCAGACTGGATGCTCAACAAAAGAAGCTCAACCTTCCAATCCTTCCAACCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA