1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gtttctttctcaccaaaaatgaggctcattatctacattgcataaattttgaatgtgtgatgatctggtcactcatgtgatgattttctgcaatttccagTTTCCATAATTTGCTGGGCAAGACCTTAATCCAAGAACCAACATTTGATAGGATAATTGTTGTCTACAG
species | Glycine max |
transcript | GLYMA19G27800.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAAAATATGCAACTAAG TTTCCATAATTTGCTGGGCAAGACCTTAATCCAAG-ACCAACATTTGATAGEST: gi|207705325|gb|GD687357.1|GD687357
genomic: GAAAATATGCAACTAAGgtcataaatt ... caatttccagTTTCCATAATTTGCTGGGCAAGACCTTAATCCAAGAACCAACATTTGATAG
EST: GGGCAGGACCTTTATGTTGAACGGATACGTCTTGAAAATATGCAACTAAG TTTCCATAATTTGCTGGGCAAGACCTTAATCCAAGAACCAACATTTGATAG
genomic: GGGCAGGACCTTTATGTTGAACGGATACGTCTTGAAAATATGCAACTAAGgtcataaatt ... caatttccagTTTCCATAATTTGCTGGGCAAGACCTTAATCCAAGAACCAACATTTGATAG
attttgaatgtgtgatgatctggtcactcatgtgatgattttctgcaatttccagTTTCCATAATTTGCTGGGCAAGACCTTAATCCAAGAACCAACATTTGATAGGATAATTGTTGTCTACAG
ttttctgc CT-rich tract
atgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttctttctcaccaaaaatgaggctcattatctacattgcataaattttgaatgtgtgatgatctggtcactcatgtgatgattttctgcaatttccagTTTCCATAATTTGCTGGGCAAGACCTTAATCCAAGAACCAACATTTGATAGGATAATTGTTGTCTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - caccaaa
- - - - - - - - - atgaggc
- - - - - - - - - - - - - - - - - - - tgcataa
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcactca