1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaaatgttggacatttactttgttttattcagtattttgttgtttaaattcaaatttaacctcgatgatacaactgtcccagGCAGCTTTAAATACTGAAGATCCACAATATCAAGATAAAAGAATGGTGGCTCAAAGAAATGGAAAGTTATCAGTTCAAGTTTTTCAT
species | Glycine max |
transcript | GLYMA19G22520.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACTATGGTTTTGTTGATGAAAATAATTCCAATGATCGTCTTATAGTTGAG GCAGCCTTTAAATEST: gi|8283385|gb|BE020946.1|BE020946
genomic: ACTATGGTTTTGTTGATGAAAATAATTCCAATGATCGTCTTATAGTTGAGgtaaatgttg ... actgtcccagGCAGC-TTTAAAT
EST: ACTATGGTTTTGTTGATGAAAATAATTCCAATGATCGTCTTATAGTTGAG GCAGCTTTAAATACTGAAEST: gi|197661912|gb|FD480321.1|FD480321
genomic: ACTATGGTTTTGTTGATGAAAATAATTCCAATGATCGTCTTATAGTTGAGgtaaatgttg ... actgtcccagGCAGCTTTAAATACTGAA
EST: ACTATGGTTTTGTTGATGAAAATAATTCCAATGATCGTCTTATAGTTGAG GCAGCTTTAAATACTGAAGATCCACAATATCAAGATAAAAGAATGGTGGCTEST: gi|20815055|gb|BQ299533.1|BQ299533
genomic: ACTATGGTTTTGTTGATGAAAATAATTCCAATGATCGTCTTATAGTTGAGgtaaatgttg ... actgtcccagGCAGCTTTAAATACTGAAGATCCACAATATCAAGATAAAAGAATGGTGGCT
EST: ACTATGGTTTTGTTGATGAAAATAATTCCAATGATCGTCTTATAGTTGAG GCAGCTTTAAATACTGAAGATCCACAATATCAAGATAAAAGAATGGTGGCTEST: gi|21994328|gb|BQ785856.1|BQ785856
genomic: ACTATGGTTTTGTTGATGAAAATAATTCCAATGATCGTCTTATAGTTGAGgtaaatgttg ... actgtcccagGCAGCTTTAAATACTGAAGATCCACAATATCAAGATAAAAGAATGGTGGCT
EST: ACTATGGTTTTGTTGATGAAAATAATTCCAATGATCGTCTTATAGTTGAG GCAGCTTTAAATACTGAAGATCCACAATATCAAGATAAAAGAATGGTGGCTEST: gi|19348347|gb|BM892879.1|BM892879
genomic: ACTATGGTTTTGTTGATGAAAATAATTCCAATGATCGTCTTATAGTTGAGgtaaatgttg ... actgtcccagGCAGCTTTAAATACTGAAGATCCACAATATCAAGATAAAAGAATGGTGGCT
EST: ACTATGGTTTTGTTGATGAAAATAATTCCAATGATCGTCTTATAGTTGAG GCAGCTTTAAATACTGAAGATCCACAATATCAAGATAAAAGAATGGTGGCTEST: gi|20814963|gb|BQ299441.1|BQ299441
genomic: ACTATGGTTTTGTTGATGAAAATAATTCCAATGATCGTCTTATAGTTGAGgtaaatgttg ... actgtcccagGCAGCTTTAAATACTGAAGATCCACAATATCAAGATAAAAGAATGGTGGCT
EST: ACTATGGTTTTGTTGATGAAAATAATTCCAATGATCGTCTTATAGTTGAG GCAGCTTTAAATACTGAAGATCCACAATATCAAGATAAAAGAATGGTGGCT
genomic: ACTATGGTTTTGTTGATGAAAATAATTCCAATGATCGTCTTATAGTTGAGgtaaatgttg ... actgtcccagGCAGCTTTAAATACTGAAGATCCACAATATCAAGATAAAAGAATGGTGGCT
ttcagtattttgttgtttaaattcaaatttaacctcgatgatacaactgtcccagGCAGCTTTAAATACTGAAGATCCACAATATCAAGATAAAAGAATGGTGGCTCAAAGAAATGGAAAGTTATCAGTTCAAGTTTTTCAT
atttaac putative branch site (score: 3)
ctgtccc putative PPT
tattttgttgtttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgttggacatttactttgttttattcagtattttgttgtttaaattcaaatttaacctcgatgatacaactgtcccagGCAGCTTTAAATACTGAAGATCCACAATATCAAGATAAAAGAATGGTGGCTCAAAGAAATGGAAAGTTATCAGTTCAAGTTTTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA