1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aattacaactggatgtttcttttggctttggttggtgaattatgacattatattagttagtgttttcagtttagtttaataacccattccctttcattagCCTCTTAACAGGGATCATGGGTATCCATTACGTGTGGTTGTTCCTGGTGTCATTGGAGCCCGGTCTGTTAAATGGCTGGAAGATATCAATATCATTGAAG
species | Glycine max |
transcript | GLYMA19G18330.4 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAAATCCTGAAGCAGATGTTCTACTAGCTTATGAAATGAATGGTGAA CCTCTTAACAGGGATCATGGGTATCCATTACGTGTGGTTGTTCCTGGTGTCEST: gi|208054138|gb|GD855367.1|GD855367
genomic: CAAATCCTGAAGCAGATGTTCTACTAGCTTATGAAATGAATGGTGAAgtaagtgaat ... ctttcattagCCTCTTAACAGGGATCATGGGTATCCATTACGTGTGGTTGTTCCTGGTGTC
EST: CCACAAATCCTGAAGCAGATGTTCTACTAGCTTATGAAATGAATGGTGAA CCTCTTAACAGGGATCATGGGTATCCATTACGTGTGGTTGTTCCTGGTGTCEST: gi|208074830|gb|GD869573.1|GD869573
genomic: CCACAAATCCTGAAGCAGATGTTCTACTAGCTTATGAAATGAATGGTGAAgtaagtgaat ... ctttcattagCCTCTTAACAGGGATCATGGGTATCCATTACGTGTGGTTGTTCCTGGTGTC
EST: CCACAAATCCTGAAGCAGATGTTCTACTAGCTTATGAAATGAATGGTGAA CCTCTTAACAGGGATCATGGGTATCCATTACGTGTGGTTGTTCCTGGTGTCEST: gi|193517834|gb|FK473053.1|FK473053
genomic: CCACAAATCCTGAAGCAGATGTTCTACTAGCTTATGAAATGAATGGTGAAgtaagtgaat ... ctttcattagCCTCTTAACAGGGATCATGGGTATCCATTACGTGTGGTTGTTCCTGGTGTC
EST: CCACAAATCCTGAAGCAGATGTTCTACTAGCTTATGAAATGAATGGTGAA CCTCTTAACAGGGEST: gi|207740505|gb|GD713771.1|GD713771
genomic: CCACAAATCCTGAAGCAGATGTTCTACTAGCTTATGAAATGAATGGTGAAgtaagtgaat ... ctttcattagCCTCTTAACAGGG
EST: CCACAAATCCTGAAGCAGATGTTCTACTAGCTTATGAAATGAATGGTGAA CCTCTTAACAGGGATCATGGGTATCCATTACGTGTGGTTGTTCCTGGTGTCEST: gi|193335863|gb|FK299793.1|FK299793
genomic: CCACAAATCCTGAAGCAGATGTTCTACTAGCTTATGAAATGAATGGTGAAgtaagtgaat ... ctttcattagCCTCTTAACAGGGATCATGGGTATCCATTACGTGTGGTTGTTCCTGGTGTC
EST: CACAAATACCTGAAGCAGATGTTCTACTAGCTTATGAAATGAATGGTGAA CCTCTTAACAGGGATCATGGGTATCCATTACGTGTGGTTGTTCCTGGTGTCEST: gi|208296656|gb|GE091296.1|GE091296
genomic: CACAAAT-CCTGAAGCAGATGTTCTACTAGCTTATGAAATGAATGGTGAAgtaagtgaat ... ctttcattagCCTCTTAACAGGGATCATGGGTATCCATTACGTGTGGTTGTTCCTGGTGTC
EST: CCACAAATCCTGAAGCAGATGTTCTACTAGCTTATGAAATGAATGGTGAA CCTCTTAACAGGGATCATGGGTATCCATTACGTGTGGTTGTTCCTGGTGTC
genomic: CCACAAATCCTGAAGCAGATGTTCTACTAGCTTATGAAATGAATGGTGAAgtaagtgaat ... ctttcattagCCTCTTAACAGGGATCATGGGTATCCATTACGTGTGGTTGTTCCTGGTGTC
cattatattagttagtgttttcagtttagtttaataacccattccctttcattagCCTCTTAACAGGGATCATGGGTATCCATTACGTGTGGTTGTTCCTGGTGTCATTGGAGCCCGGTCTGTTAAATGGCTGGAAGATATCAATATCATTGAAG
taataac putative branch site (score: 1)
cccattccctttcatt CT-rich tract
agtttagtttaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattacaactggatgtttcttttggctttggttggtgaattatgacattatattagttagtgttttcagtttagtttaataacccattccctttcattagCCTCTTAACAGGGATCATGGGTATCCATTACGTGTGGTTGTTCCTGGTGTCATTGGAGCCCGGTCTGTTAAATGGCTGGAAGATATCAATATCATTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG