1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttgtattttgtaatgtagtccaacgatatgttacttttggtctgctaatagaaatccaaagatccatctttccttgtgtgtgactccattttttcccaattcttttcatgcatttctttttggtaatctgtgtgttgttactaagagattgactcttttttaatgattttgcagACTGCTTACAATGTTGTTGCTTACAAGGATAAACCACGTTTGAAGAGTGCTGTAGAAATGCTTAAAACTACCGAAGAAATAGAACAGCGATTGAAAGAAG
species | Glycine max |
transcript | GLYMA19G06470.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACAAGGATTTAGCAGAAGCAGCATTCAGAGATTTGAAGAAGAGGGAACAG ACTGCTTACAATGTTGTTGCTTACAAGGATAAACCACGTTTGAAGAGTGCTEST: gi|209696543|gb|BW655696.1|BW655696
genomic: ACAAGGATTTAGCAGAAGCAGCATTCAGAGATTTGAAGAAGAGGGAACAGgtttgtattt ... gattttgcagACTGCTTACAATGTTGTTGCTTACAAGGATAAACCACGTTTGAAGAGTGCT
EST: ACAAGGATTTAGCAGAAGCAGCATTCAGAGATTTGAAGAAGAGGGAACAG ACTGCTTACAATGTTGTTGCEST: gi|15203020|gb|BI425788.1|BI425788
genomic: ACAAGGATTTAGCAGAAGCAGCATTCAGAGATTTGAAGAAGAGGGAACAGgtttgtattt ... gattttgcagACTGCTTACAATGTTGTTGC
EST: ACAAGGATTTAGCAGAAGCAGCATTCAGAGATTTGAAGAAGAGGGAACAG ACTGCTTACAATGTTGTTGCTTACAAGGATAAACCACGT
genomic: ACAAGGATTTAGCAGAAGCAGCATTCAGAGATTTGAAGAAGAGGGAACAGgtttgtattt ... gattttgcagACTGCTTACAATGTTGTTGCTTACAAGGATAAACCACGT
ttggtaatctgtgtgttgttactaagagattgactcttttttaatgattttgcagACTGCTTACAATGTTGTTGCTTACAAGGATAAACCACGTTTGAAGAGTGCTGTAGAAATGCTTAAAACTACCGAAGAAATAGAACAGCGATTGAAAGAAG
ttttaat putative branch site (score: 3)
tcttttttaatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtattttgtaatgtagtccaacgatatgttacttttggtctgctaatagaaatccaaagatccatctttccttgtgtgtgactccattttttcccaattcttttcatgcatttctttttggtaatctgtgtgttgttactaagagattgactcttttttaatgattttgcagACTGCTTACAATGTTGTTGCTTACAAGGATAAACCACGTTTGAAGAGTGCTGTAGAAATGCTTAAAACTACCGAAGAAATAGAACAGCGATTGAAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG