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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtatcatgtgaccttgtgacctgtgtctgttataaaccaaagcaaatttctgctcactgtttctgttttgtttgtttatcagATTAAACTACCTTTCGAAAAACTCATACATGCCTTGAAAAACTTTCCCGAGGGTGCAATGAATCCGGATACATTGTTACCACTGGCTTATTCTATCAAG

Basic information

species Glycine max
transcript GLYMA19G05360.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G05360.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G02460.2 (Arabidopsis thaliana), 3'ss of exon 6
-------gttagtatcatg-tgaccttgtgacctgtgtctgtt-ataaacca-aagcaaatttct----gctcactgtttctgttttgtttgtttatcagATTAAACTACCTTTCGAAAAACTCATACATGCCTTGAAAAACTTTCCCGAGGGTGCAATGAATCCGGATACATTGTTACCACTGGCTTATTCTATCAAG
         || |  || | |||  | ||||     || | || |  | |   |||  ||||||      |  ||  |||        ||   |   ||| | ||  |||| || || ||||| ||||||||  ||||||  || || || |  ||||||||||||||||| ||| | ||| ||||||| |||||||||
ttgctcaagtattgccaagatgagttggtgagtgaggtttatttacgagctgtaagttaatttcgcaaaaccaacctttttaaaaaaattaactctgcagGTAAAGTTACCGTTTGAGAAACTAATACATGCTCTGAAAACTTTCCCGGAAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCAAG

upper sequence: GLYMA19G05360.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G02460.1 (Arabidopsis thaliana), 3'ss of exon 7
gttagtatcatgtgaccttgtgacctgtgtctgtt-ataaacca-aagcaaatttct----gctcactgtttctgttttgtttgtttatcagATTAAACTACCTTTCGAAAAACTCATACATGCCTTGAAAAACTTTCCCGAGGGTGCAATGAATCCGGATACATTGTTACCACTGGCTTATTCTATCAAG
                   ||||     || | || |  | |   |||  ||||||      |  ||  |||        ||   |   ||| | ||  |||| || || ||||| ||||||||  ||||||  || || || |  ||||||||||||||||| ||| | ||| ||||||| |||||||||
-------------------gtgagtgaggtttatttacgagctgtaagttaatttcgcaaaaccaacctttttaaaaaaattaactctgcagGTAAAGTTACCGTTTGAGAAACTAATACATGCTCTGAAAACTTTCCCGGAAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCAAG

upper sequence: GLYMA19G05360.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv14s0083g00540.t01 (Vitis vinifera), 3'ss of exon 7
gttagtatcatgtgaccttgtgacctgtgtctgttataaaccaaagcaaatttctgctcactgtttctgttttgtttgtttatcagATTAAACTACCTTTCGAAAAACTCATACATGCCTTGAAAAACTTTCCCGAGGGTGCAATGAATCCGGATACATTGTTACCACTGGCTTATTCTATCAAG
|| ||||||    | ||||||  ||| |   |   |  ||  |   |   ||| |||| | |   |   | |  ||   | ||||||  |||||||||||||| |||||||||||||| |||   ||||| || |||| |||||||||||| |||||| | |||||  |||| || || ||||||
gtgagtatccctggtccttgtttcctttagatccaaataattagtactt-tttatgcttattaaatgaatatatttatctgatcagACAAAACTACCTTTCGAGAAACTCATACATGCTTTGCGTAACTTCCCTGAGGATGCAATGAATCCAGATACACTATTACCGATGGCCTACTCAATCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335212|gb|CO979078.1|CO979078
EST:     TTGTCTTTAAAGTTGGCTTGGCCCTATTAAAGTACTGCCATGATGACTTG                         ATTAAACTACCTTTCGAAAAACTCATACATGCCTTGAAAAACTTTCCCGAG
genomic: TTGTCTTTAAAGTTGGCTTGGCCCTATTAAAGTACTGCCATGATGACTTGgttagtatca ... tgtttatcagATTAAACTACCTTTCGAAAAACTCATACATGCCTTGAAAAACTTTCCCGAG
EST: gi|18040193|gb|BM308487.1|BM308487
EST:     TTGTCTTTAAAGTTGGCTTGGCCCTATTAAAGTACTGCCATGATGACTTG                         ATTAAACTACCTTTCGAAAAACTCATACATGCCTTGAAAAACTTTCCCGAG
genomic: TTGTCTTTAAAGTTGGCTTGGCCCTATTAAAGTACTGCCATGATGACTTGgttagtatca ... tgtttatcagATTAAACTACCTTTCGAAAAACTCATACATGCCTTGAAAAACTTTCCCGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttataaaccaaagcaaatttctgctcactgtttctgttttgtttgtttatcagATTAAACTACCTTTCGAAAAACTCATACATGCCTTGAAAAACTTTCCCGAGGGTGCAATGAATCCGGATACATTGTTACCACTGGCTTATTCTATCAAG
                       tgctcac  putative branch site (score: 2)
                                tttctgttttgttt  putative PPT
                                      ttttgtttgtttat  TA-rich tract