1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaattaagccactttcttgcatttttgtgctgaatgtggtgatttaatttgaattgtattttaatgattgtcccttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACAACTCAAGCTCAACAAGTCAATGGATTTATTCCTGGATGGATGCTTTGA
species | Glycine max |
transcript | GLYMA19G04320.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCTCAAGGCTTTTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG TTTTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACEST: gi|8402165|gb|BE057799.1|BE057799
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG TTCTGACTACAGGAACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACEST: gi|193552261|gb|FK509410.1|FK509410
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCATCTAGCTGCCACEST: gi|207776290|gb|GD749611.1|GD749611
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTEST: gi|8285406|gb|BE022965.1|BE022965
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCT
EST: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACEST: gi|207819216|gb|GD789920.1|GD789920
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: CCACATTGCAGATAGG TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACEST: gi|208114010|gb|GD909353.1|GD909353
genomic: CCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: AGTGCAACCCCACATTGCAGATAGG TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACEST: gi|208324765|gb|GE125773.1|GE125773
genomic: AGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACEST: gi|193455797|gb|FK420530.1|FK420530
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACEST: gi|193494014|gb|FK461870.1|FK461870
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCNCATTGCAGATAGG TTCTGACTACAGGTACATACCCTAGAAAGCCTCAGAGCAGCAGCTAGCTGCEST: gi|7589900|gb|AW705674.1|AW705674
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACAT-CCCT-GAA-GCCTCAGAGCAGCAGCTAGCTGC
EST: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACEST: gi|5677144|gb|AI938274.1|AI938274
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACEST: gi|6951856|gb|AW423924.1|AW423924
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: CTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACEST: gi|208271379|gb|GE072585.1|GE072585
genomic: CTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: AGTGCAACCCCACATTGCAGATAGG TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACEST: gi|207696567|gb|GD678688.1|GD678688
genomic: AGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACEST: gi|208179425|gb|GD974086.1|GD974086
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACEST: gi|208336791|gb|GE136035.1|GE136035
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACEST: gi|193508339|gb|FK466182.1|FK466182
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACEST: gi|193524586|gb|FK483157.1|FK483157
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACEST: gi|208283379|gb|GE083255.1|GE083255
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACEST: gi|208176220|gb|GD974339.1|GD974339
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACEST: gi|208314345|gb|GE110433.1|GE110433
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: TTTGGAGTGCAACCCCTACTATTGTCAGATAGG TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAEST: gi|193510320|gb|FK470276.1|FK470276
genomic: TTTGGAGTGCAACCCC-AC-ATTG-CAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCA
EST: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACEST: gi|193608890|gb|FK563406.1|FK563406
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACEST: gi|18733553|gb|BM527677.1|BM527677
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACEST: gi|207757901|gb|GD729151.1|GD729151
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACEST: gi|208068232|gb|GD866586.1|GD866586
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG TTCTGACTACAGGTACATCCCTGAAGCCTCTGAGCAGCAGCTAGCTGCCACEST: gi|207796829|gb|GD768891.1|GD768891
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: TTTGGAGTGCAACCCCACATTGCAGATAGG TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACEST: gi|9984961|gb|BE659069.1|BE659069
genomic: TTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: CTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
genomic: CTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
gctgaatgtggtgatttaatttgaattgtattttaatgattgtcccttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACAACTCAAGCTCAACAAGTCAATGGATTTATTCCTGGATGGATGCTTTGA
ttttaat putative branch site (score: 3)
ttgtccctt putative PPT
tgatttaatttgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattaagccactttcttgcatttttgtgctgaatgtggtgatttaatttgaattgtattttaatgattgtcccttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCACAACTCAAGCTCAACAAGTCAATGGATTTATTCCTGGATGGATGCTTTGA
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