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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgcttcaatgcagattctattagatgacttgctctaaataactttctgtcgaaaattaaccatatttcataagtttttttcctgctatgaagtatggtgtcaaccttttgatgttctggatatattatttttctgtgcagGCTGGGGTCCTTATGCGTATTTTAGGATGTTGGAAGAATCTCGTGGTATGACCCAAGTTCCTAGTGTTCAAAATTCTGGTCAAGCGCAGTTAGCAGAGGC

Basic information

species Glycine max
transcript GLYMA18G53100.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209704417|gb|BW680600.1|BW680600
EST:     GCTACATTTTGCTATTTGCAGTTTTTTCCTCCTCCTTATCATTCTGAAG                         GCTGGGGTCCTTATGCGTATTTTAGGATGTTGGAAGAATCTCGTGGTATGA
genomic: GCTACATTTTGCTATTTGCAGTTTTTTCCTCCTCCTTATCATTCTGAAGgtttgcttca ... ttctgtgcagGCTGGGGTCCTTATGCGTATTTTAGGATGTTGGAAGAATCTCGTGGTATGA
EST: gi|51338216|gb|CO982082.1|CO982082
EST:     GGCTACATTTTGCTATTTGCAGTTTTTTCCTCCTCCTTATCATTCTGAAG                         GCTGGGGTCCTTATGCGTATTTTAGGATGTTGGAAGAATCTCGTGGTATGA
genomic: GGCTACATTTTGCTATTTGCAGTTTTTTCCTCCTCCTTATCATTCTGAAGgtttgcttca ... ttctgtgcagGCTGGGGTCCTTATGCGTATTTTAGGATGTTGGAAGAATCTCGTGGTATGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgaagtatggtgtcaaccttttgatgttctggatatattatttttctgtgcagGCTGGGGTCCTTATGCGTATTTTAGGATGTTGGAAGAATCTCGTGGTATGACCCAAGTTCCTAGTGTTCAAAATTCTGGTCAAGCGCAGTTAGCAGAGGC
                    ttttgat  putative branch site (score: 4)
                                       ttatttttct  putative PPT
                                  atatattatttttctg  TA-rich tract