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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttttttttatttgcttgtatatataaaagaactatcttgtaaagtttcttctcctcccaatagaaccttaggttgtcaaaatatttctatgtgccgcctatggtattgctacccttctacacagtaaggggcatatttttttatgcatgaagttaatgaaaaaaagaattactgagtcgagtgatttcagGGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCATCAACAGTTGTATTGATTGATCACTTGGGCTTCATCAAACCACCATT

Basic information

species Glycine max
transcript GLYMA18G52160.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207761223|gb|GD733328.1|GD733328
EST:     TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAG                         GGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
genomic: TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAGgtattttttt ... gtgatttcagGGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
EST: gi|207801091|gb|GD774136.1|GD774136
EST:     TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAG                         GGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
genomic: TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAGgtattttttt ... gtgatttcagGGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
EST: gi|193521202|gb|FK480313.1|FK480313
EST:     TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAG                         GGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCATAGAATTTCCA
genomic: TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAGgtattttttt ... gtgatttcagGGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
EST: gi|192313847|gb|FK008755.1|FK008755
EST:     TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAG                         GGGATTGGTCTATATATGCCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
genomic: TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAGgtattttttt ... gtgatttcagGGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
EST: gi|208082323|gb|GD883857.1|GD883857
EST:     TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAG                         GGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
genomic: TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAGgtattttttt ... gtgatttcagGGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
EST: gi|208098951|gb|GD892726.1|GD892726
EST:     TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAG                         GGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
genomic: TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAGgtattttttt ... gtgatttcagGGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
EST: gi|208178308|gb|GD978261.1|GD978261
EST:     CTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAG                         GGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
genomic: CTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAGgtattttttt ... gtgatttcagGGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
EST: gi|208293942|gb|GE096001.1|GE096001
EST:     TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAG                         GGGATTGGTCTATATATGTCTGAGATTGTGCAGTTGTGCACAGAATTTCCA
genomic: TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAGgtattttttt ... gtgatttcagGGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
EST: gi|208194187|gb|GD993868.1|GD993868
EST:     TCCAAAGGGCNGGAGAACTGAATGTGCCAGTGGGATTCTTGTGCATGAAG                         GGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
genomic: TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAGgtattttttt ... gtgatttcagGGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
EST: gi|19053108|gb|BM731775.1|BM731775
EST:     ACTGAATGTACCAGTGGGATTCTTGTGCATGAAG                         GGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
genomic: ACTGAATGTACCAGTGGGATTCTTGTGCATGAAGgtattttttt ... gtgatttcagGGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
EST: gi|193667121|gb|FK608029.1|FK608029
EST:     TGTACCAGTGGGATTCTTGTGCATGAAG                         GGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
genomic: TGTACCAGTGGGATTCTTGTGCATGAAGgtattttttt ... gtgatttcagGGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
EST: gi|208238132|gb|GE040452.1|GE040452
EST:     TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAG                         GGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
genomic: TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAGgtattttttt ... gtgatttcagGGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
EST: gi|193710603|gb|FK646857.1|FK646857
EST:     TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAG                         GGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
genomic: TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAGgtattttttt ... gtgatttcagGGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
EST: gi|207685175|gb|GD669067.1|GD669067
EST:     TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAG                         GGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
genomic: TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAGgtattttttt ... gtgatttcagGGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
EST: gi|6070794|gb|AW100181.1|AW100181
EST:     TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAG                         GGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
genomic: TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAGgtattttttt ... gtgatttcagGGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
EST: gi|208114454|gb|GD908523.1|GD908523
EST:     TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAG                         GGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
genomic: TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAGgtattttttt ... gtgatttcagGGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
EST: gi|21677449|gb|BQ629800.1|BQ629800
EST:     TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAG                         GGGATTGGTCTATATATGTCTGA
genomic: TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAGgtattttttt ... gtgatttcagGGGATTGGTCTATATATGTCTGA
EST: gi|207797018|gb|GD770326.1|GD770326
EST:     TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAG                         GGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA
genomic: TCCAAAGGGCTGGAGAACTGAATGTACCAGTGGGATTCTTGTGCATGAAGgtattttttt ... gtgatttcagGGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttatgcatgaagttaatgaaaaaaagaattactgagtcgagtgatttcagGGGATTGGTCTATATATGTCTGAGATTGAGCAGTTGTGCACAGAATTTCCATCAACAGTTGTATTGATTGATCACTTGGGCTTCATCAAACCACCATT
               agttaat  putative branch site (score: 4)
              aagttaatgaaaaaaa  TA-rich tract