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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tgtaagccatatcttatgtaaaacaatggtcttagaggcccagatatgttcccttatatgaatattgtgttgcaGAAATGATGAGGAAGGTCTTGTCTTTTCTCAACTTTTAAATCTGTCTAGATTCCCACA

Basic information

species Glycine max
transcript GLYMA18G52130.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192300837|gb|FG989734.1|FG989734
EST:     CCCATCAACAGTTGTATTGCTTGATCACTTGGGCTTTTGCAAACCACCAA                         TAAATGATGAGGAAGGTCTTGTCTTTTCTCAACTTTTAAATCTGTCTAGAT
genomic: CCCATCAACAGTTGTATTGCTTGATCACTTGGGCTTTTGCAAACCACCAAtgtaagccat ... ttgtgttgcaGAAATGATGAGGAAGGTCTTGTCTTTTCTCAACTTTTAAATCTGTCTAGAT
EST: gi|209696783|gb|BW680404.1|BW680404
EST:     CCCATCAACAGTTGTATTGCTTGATCACTTGGGCTTTTGCAAACCACCAA                         TAAATGATGAGGAAGGTCTTGTCTTTTCTCAACTTTTAAATCTGTCTAGAT
genomic: CCCATCAACAGTTGTATTGCTTGATCACTTGGGCTTTTGCAAACCACCAAtgtaagccat ... ttgtgttgcaGAAATGATGAGGAAGGTCTTGTCTTTTCTCAACTTTTAAATCTGTCTAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaacaatggtcttagaggcccagatatgttcccttatatgaatattgtgttgcaGAAATGATGAGGAAGGTCTTGTCTTTTCTCAACTTTTAAATCTGTCTAGATTCCCACA
                                  ttatatgaatattgt  TA-rich tract