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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacaaaatgttctttctttctttttttccaatttttagagtatctatgtcacctgcgcatttctagactgtttactaacttgctcttgaatgttttgataaatcattttagCCATACAACTCAGTGTTCCCGCGCACGTTCAGATTTCAGAATGAAAGTGACAATTCACTAG

Basic information

species Glycine max
transcript GLYMA18G50410.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9899332|gb|BE608300.1|BE608300
EST:     CAAATACATTGCTGTTGGATGATTCTCCATACAAGGCATTGCTTAATCCA                         CCATACAACTCAGTGTTCCCGCGCACGTTCACATTTCAGAATGAAAGTGAC
genomic: CAAATACATTGCTGTTGGATGATTCTCCATACAAGGCATTGCTTAATCCAgtaaacaaaa ... atcattttagCCATACAACTCAGTGTTCCCGCGCACGTTCAGATTTCAGAATGAAAGTGAC
EST: gi|193643728|gb|FK590803.1|FK590803
EST:     CAAATACATTGCTGTTGGATGATTCTCCATACAAGGCATTGCTTAATCCA                         CCATACAACTCAGTGTTCCCGCGCACGTTCAGATTTCAGAATGAAAGTGAC
genomic: CAAATACATTGCTGTTGGATGATTCTCCATACAAGGCATTGCTTAATCCAgtaaacaaaa ... atcattttagCCATACAACTCAGTGTTCCCGCGCACGTTCAGATTTCAGAATGAAAGTGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatttctagactgtttactaacttgctcttgaatgttttgataaatcattttagCCATACAACTCAGTGTTCCCGCGCACGTTCAGATTTCAGAATGAAAGTGACAATTCACTAG
                                              tcatttt  CT-rich tract
                                aatgttttgataaatc  TA-rich tract