1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagtgctttctatagagctgagcctccatggaaggatatcgtaattggttattgtggataacatagtgccaatttttccgcagAATGCTGCATACCTATTCATCAGAGGCATGAAAACGCTGCATCTCCGTGTACAGCAGCAGAATTCAACAGGAATGAGGATGGCCGAACTTTTAGAGGCAC
species | Glycine max |
transcript | GLYMA18G49660.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCTCGCAAATTCGGACTTTGCACCATGTCTTGGGTGGTACACTTAACCCG AATGCTGCATACCTATTCATCAGAGGCATGAAAACGCTGCATCTCCGTGTAEST: gi|254343496|gb|GR857252.1|GR857252
genomic: TTTCGCAAATTCGGACTTTGCACCATGTTTTGGGTGGTACACTTAACCCGgtaagtgctt ... ttttccgcagAATGCTGCATACCTATTCATCAGAGGCATGAAAACGCTGCATCTCCGTGTA
EST: TTTCGCAAATTCGGACTTTGCACCATGTTTTGG-TGGTACACTTAACCCG AATGCTGCATACCTATTCATCAEST: gi|192322238|gb|FK014134.1|FK014134
genomic: TTTCGCAAATTCGGACTTTGCACCATGTTTTGGGTGGTACACTTAACCCGgtaagtgctt ... ttttccgcagAATGCTGCATACCTATTCATCA
EST: TTTCGCAAATTCGGACTTTGCACCATGTTTTGGGTGGTACACTTAACCCG AATGCTGCATACCTATTCATCAGAGGCATGAAAACGCTGCATCTCCGTGTAEST: gi|192319773|gb|FK013787.1|FK013787
genomic: TTTCGCAAATTCGGACTTTGCACCATGTTTTGGGTGGTACACTTAACCCGgtaagtgctt ... ttttccgcagAATGCTGCATACCTATTCATCAGAGGCATGAAAACGCTGCATCTCCGTGTA
EST: TTTCGCAAATTCGGACTTTGCACCATGTTTTGGGTGGTACACTTAACCCG AATGCTGCATACCTATTCATCAGAGGCATGAAAACGCTGCATCTCCGTGTA
genomic: TTTCGCAAATTCGGACTTTGCACCATGTTTTGGGTGGTACACTTAACCCGgtaagtgctt ... ttttccgcagAATGCTGCATACCTATTCATCAGAGGCATGAAAACGCTGCATCTCCGTGTA
tggaaggatatcgtaattggttattgtggataacatagtgccaatttttccgcagAATGCTGCATACCTATTCATCAGAGGCATGAAAACGCTGCATCTCCGTGTACAGCAGCAGAATTCAACAGGAATGAGGATGGCCGAACTTTTAGAGGCAC
ggataac putative branch site (score: 3)
tttttccgc putative PPT
aattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgctttctatagagctgagcctccatggaaggatatcgtaattggttattgtggataacatagtgccaatttttccgcagAATGCTGCATACCTATTCATCAGAGGCATGAAAACGCTGCATCTCCGTGTACAGCAGCAGAATTCAACAGGAATGAGGATGGCCGAACTTTTAGAGGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG