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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

taggctttctactattattgattttattttattctgttaactacaactcgtacactcttgattgtctaactattttaaaactcttactagtGTTATGAGGCACATACCCCTAGATTCAATTGATCCATCCTTGGCTATTGGATTTTACTGCCGAGACAAAGG

Basic information

species Glycine max
transcript GLYMA18G48380.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G48380.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv00s0215g00030.t01 (Vitis vinifera), 3'ss of exon 8
taggctttctactattattgattttattttattctgttaactacaactcgtacactcttgattgtctaactattttaaaactcttactagtGTTATGAGGCACATACCCCTAGATTCAATTGATCCATCCTTGGCTATTGGATTTTACTGCCGAGACAAAGG
         ||   ||  ||  ||||   |  | ||||  |   | || ||   ||| |  ||    | ||   | || | |    | ||| | ||  | |||||   ||| || || ||||||||||||||||| ||||| || |||||||||||||||| 
--------gtaa-gtttctggatttagaatgatttgttcccgtaagcttgttttctccttgtttctcatct---tcaatagttgctccagTATCATACGACACATTTGCCTTGACTCGATTGATCCATCCTTGGCGATTGGGTTCTACTGCCGAGACAAAG-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9984729|gb|BE658837.1|BE658837
EST:     TCAGTGGGGATACTCAAGAGCCTACTGGTACTTCATCATACCATTGCAAT                         GTTATGAGGCACATACCCCTAGATTCAATTGATCCATCCTTGGCTATTGGA
genomic: TCAGTGGGGATACTCAAGAGCCTACTGGTACTTCATCATACCATTGCAAGtaggctttct ... tcttactagtGTTATGAGGCACATACCCCTAGATTCAATTGATCCATCCTTGGCTATTGGA
EST: gi|6228207|gb|AW156806.1|AW156806
EST:     TCAGTGGGGATACTCAAGAGCCTACTGGTACTTCATCATACCATTGCAAT                         GTTATGAGGCACATACCCCTAGATTCAATTGATCCATCCTTGGCTATTGGA
genomic: TCAGTGGGGATACTCAAGAGCCTACTGGTACTTCATCATACCATTGCAAGtaggctttct ... tcttactagtGTTATGAGGCACATACCCCTAGATTCAATTGATCCATCCTTGGCTATTGGA
EST: gi|151399584|gb|EV269455.1|EV269455
EST:     AGTGGGGATACTCAAGAGCCTACTGGTACTTCATCATACCATTGCAAT                         GTTATGAGGCACATACCCCTAGATTCAATTGATCCATCCTTGGCTATTGGA
genomic: AGTGGGGATACTCAAGAGCCTACTGGTACTTCATCATACCATTGCAAGtaggctttct ... tcttactagtGTTATGAGGCACATACCCCTAGATTCAATTGATCCATCCTTGGCTATTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaactacaactcgtacactcttgattgtctaactattttaaaactcttactagtGTTATGAGGCACATACCCCTAGATTCAATTGATCCATCCTTGGCTATTGGATTTTACTGCCGAGACAAAGG
                                            ctcttact  CT-rich tract
                            tctaactattttaaaa  TA-rich tract