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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcttagtattttctctgttgaattttttaaggattttctggaaaggtgtgatcatctcattctctctgtagAGCATTTTCTGTTTCAGGAAAGGTCAGACCAGAGGAAGCTGTTCAAGCTACACTCTCTTCTCTGCCAGACGAGGTTGTAGATACTGTGGGGGTGACAACT

Basic information

species Glycine max
transcript GLYMA18G48050.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G48050.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G65540.1 (Arabidopsis thaliana), 3'ss of exon 7
------gtatcttagtattttctctgt---tgaattttttaaggattttctggaaaggtgtgatcatctcattctctctgta----------gAGCATTTTCTGTTTCAGGAAAGGTCAGACCAGAGGAAGCTGTTCAAGCTACACTCTCTTCTCTGCCAGACGAGGTTGTAGATACTGTGGGGGTGACAACT
       | ||||   | |   ||  |   |  ||| | ||   |   |   ||| |   |    |  |  ||||  |||||          || |||| ||  |  | || ||  |||  ||||| || |||||||||||||| ||||| ||||||||||| |||||||| || || || ||||| ||| ||
gtaagcttttcttgcaactcagtcaatatatatattatatacaaagaattaagaatgacattgcgacatttttcttcctgtacgtattgacagATCATTCTCAATGGCTGGGAAACTCAAGCCAGAAGAGGCTGTTCAAGCTACTCTCTCCTCTCTGCCAGATGAGGTTGTGGACACAGTTGGGGTTACAGCT

upper sequence: GLYMA18G48050.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv00s0220g00090.t01 (Vitis vinifera), 3'ss of exon 5
-------------------gtatcttagtattttctctgttgaattttttaaggattttctggaaaggtgtg--atcatctcattctctctgtagAGCATTTTCTGTTTCAGGAAAGGTCAGACCAGAGGAAGCTGTTCAAGCTACACTCTCTTCTCTGCCAGACGAGGTTGTAGATACTGTGGGGGTGACAACT
                   ||   |  || |||   |  |  |||||||        ||||       |     ||  ||  || |  | || ||||| ||  |||| || ||||| || |  || ||||||||||||||||||||  | || ||| ||||||| |||||||| |||||||| ||||||||||||
gtaatgtgatgcttaatcagttcatatgtgtttcaaccatc-aatttttgggaccacttctaacttcttactctatggtccaataccttttgcagAGCCTTCACTGTGTCTGGAAAAGTGAAGCCGGAGGAAGCTGTTCAAGCTACCTTATCCTCTTTGCCAGATGAGGTTGTGGATACTGTTGGGGTGACAACT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgaattttttaaggattttctggaaaggtgtgatcatctcattctctctgtagAGCATTTTCTGTTTCAGGAAAGGTCAGACCAGAGGAAGCTGTTCAAGCTACACTCTCTTCTCTGCCAGACGAGGTTGTAGATACTGTGGGGGTGACAACT
                                   tcatctcattctctct  CT-rich tract
     attttttaaggatttt  TA-rich tract