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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

taggaaaaaactactttttcttcatagtacagtatgctactcatgtcagtagcactatcttggcaatgatttctaacgagataaagtgttaatatgcaggCACTGGCTGCGGCATCAAAATCTGTTGATTGTCTTAAAGTTGTTCATAGCTTGCATGTCTATTTTCTTCTTGTGGGGGATTTTAACAG

Basic information

species Glycine max
transcript GLYMA18G46610.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G46610.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv15s0046g02700.t01 (Vitis vinifera), 3'ss of exon 7
--taggaaaaaactactttttcttca----tagtacagtatgctactcatgtcagtagcactatcttggcaatgatttctaacgagataaagtgttaatatgcaggCACTGGCTGCGGCATCAAAATCTGTTGATTGTCTTAAAGTTGTTCATAGCTTGCATGTCTATTTTCTTCTTGTGGGGGATTTTAACAG
  | |||      || | |      |    || || ||  |   | | || ||||| |||   ||||  || |  ||  |     |||      |  |||||||||| |||||||| ||||| ||| |||||||||||||||| ||||| ||||| ||||| |  ||||| |||||||| ||||||||||||| 
aattggagttctttaatgtggaacaaatgttattatagcctagaatttatatcagttgcatgttcttaaca-tacttatttttaggatgc----tccatatgcagGCTCTGGCTGCAGCATCGAAAACTGTTGATTGTCTTAAGGTTGTCCATAGTTTGCACGCTTATTTCCTTCTTGTTGGGGATTTTAACA-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208216700|gb|GE012576.1|GE012576
EST:     AAATGCTCCAACATTTGGGAAGGTATTTGGTGGACAAATAGTTGGACAGG                         CACTGCCTGCGGCATCAAAATCTGTTGATTGTCTTAAAGTTGTTCATAGCT
genomic: AAATGCTCCAACATTTGGGAAGGTATTTGGTGGACAAATAGTTGGACAGGtaggaaaaaa ... aatatgcaggCACTGGCTGCGGCATCAAAATCTGTTGATTGTCTTAAAGTTGTTCATAGCT
EST: gi|192299097|gb|FG990411.1|FG990411
EST:     AAATGCTCCAACATTTGGGAAGGTATTTGGTGGACAAATAGTTGGACAGG                         CACTGGCTGCGGCATCAAAATCTGTTGATTGTCTTAAAGTTGTTCATAGCT
genomic: AAATGCTCCAACATTTGGGAAGGTATTTGGTGGACAAATAGTTGGACAGGtaggaaaaaa ... aatatgcaggCACTGGCTGCGGCATCAAAATCTGTTGATTGTCTTAAAGTTGTTCATAGCT
EST: gi|192328575|gb|FK023565.1|FK023565
EST:     AAATGCTCCAACATTTGGGAAGGTATTTGGTG-ACAAATAGTTGGACAGG                         CACTGGCTGCGGCATCAAAATCTGTTGATTGTCTTAAAGTT
genomic: AAATGCTCCAACATTTGGGAAGGTATTTGGTGGACAAATAGTTGGACAGGtaggaaaaaa ... aatatgcaggCACTGGCTGCGGCATCAAAATCTGTTGATTGTCTTAAAGTT
EST: gi|12490017|gb|BG043538.1|BG043538
EST:     AAATGCTCCAACATTTGGGAAGGTATTTGGTGGACAAATAGTTGGACAGG                         CACTGGCTGCGGCATCAAAATCTG
genomic: AAATGCTCCAACATTTGGGAAGGTATTTGGTGGACAAATAGTTGGACAGGtaggaaaaaa ... aatatgcaggCACTGGCTGCGGCATCAAAATCTG
EST: gi|254319562|gb|GR829074.1|GR829074
EST:     AAATGCTCCAACATTTGGGAAGGTATTTGGTGGACAAATAGTTGGACAGG                         CACTGGCTGCGGCATCAAAATCTGTTGATTGTCTTAAAGTTGTTCATAGCT
genomic: AAATGCTCCAACATTTGGGAAGGTATTTGGTGGACAAATAGTTGGACAGGtaggaaaaaa ... aatatgcaggCACTGGCTGCGGCATCAAAATCTGTTGATTGTCTTAAAGTTGTTCATAGCT
EST: gi|192295537|gb|FG988111.1|FG988111
EST:     AAATGCTCCAACATTTGGGAAGGTATTTGGTGGACAAATAGTTGGACAGG                         CACTGGCTGCGGCATCAAAATCTGTTGATTGTCTTAAAGTTGTTCATAGCT
genomic: AAATGCTCCAACATTTGGGAAGGTATTTGGTGGACAAATAGTTGGACAGGtaggaaaaaa ... aatatgcaggCACTGGCTGCGGCATCAAAATCTGTTGATTGTCTTAAAGTTGTTCATAGCT
EST: gi|19453234|gb|BM954644.1|BM954644
EST:     AAATGCTCCAATATTTGGGAAGGTATTTGGTGGACAAATAGTTGGACAGG                         CACTGGCTGCGGCATCAAAATCTGTTGATTGTCTTAAAGTTGTT
genomic: AAATGCTCCAACATTTGGGAAGGTATTTGGTGGACAAATAGTTGGACAGGtaggaaaaaa ... aatatgcaggCACTGGCTGCGGCATCAAAATCTGTTGATTGTCTTAAAGTTGTT
EST: gi|192298436|gb|FG988452.1|FG988452
EST:     AAATGCTCCAACATTTGGGAAGGTATTTGGTGGACAAATAGTTGGACAGG                         CACTGGCCGCGGCATCAAAATCTGTTGATTGTCTTAAAGTTGTTCATAGCT
genomic: AAATGCTCCAACATTTGGGAAGGTATTTGGTGGACAAATAGTTGGACAGGtaggaaaaaa ... aatatgcaggCACTGGCTGCGGCATCAAAATCTGTTGATTGTCTTAAAGTTGTTCATAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcagtagcactatcttggcaatgatttctaacgagataaagtgttaatatgcaggCACTGGCTGCGGCATCAAAATCTGTTGATTGTCTTAAAGTTGTTCATAGCTTGCATGTCTATTTTCTTCTTGTGGGGGATTTTAACAG
                                   ataaagtgttaatat  TA-rich tract