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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtattgtttttaaaacatgtttctcttaatgttcagtttagtattactcatttagtataaggatgattgattaattttttcagTTTGAGGATTTCCAAATGAAGTGGGCTTTTGAAACCCTGAAACGATATCGAGAAAGGTTTTGCATGTTTAATGATGATATACAG

Basic information

species Glycine max
transcript GLYMA18G46340.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G46340.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv15s0046g03670.t01 (Vitis vinifera), 3'ss of exon 7
gtttgtattgtttttaaaacatgtttctcttaatgttcagtttagtattactcat-ttagtataaggatg-attgattaattttttcagTTTGAGGATTTCCAAATGAAGTGGGCTTTTGAAACCCTGAAACGATATCGAGAAAGGTTTTGCATGTTTAATGATGATATACAG
   |  |||  ||| ||   |    | |  | || ||   | || |     |||| ||  ||   ||||| || |   |||  | ||||||||||||||| ||||||||||||||||||||||| ||  |||| |||||  ||| ||| |||||||| || ||||| ||||||
--gttcatttctttaaatctacaactattgtcatattttatctaatgcatgtcatattgttaactggatggatgggaaaatcatatcagTTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACACTACAACGTTATCGTAAAAAGTTCTGCATGTTCAACGATGACATACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttcagtttagtattactcatttagtataaggatgattgattaattttttcagTTTGAGGATTTCCAAATGAAGTGGGCTTTTGAAACCCTGAAACGATATCGAGAAAGGTTTTGCATGTTTAATGATGATATACAG
                                        gattaat  putative branch site (score: 3)
                                              ttttttc  CT-rich tract
                                  atgattgattaatttt  TA-rich tract